Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.0e-56 221.5 103 100.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 6.3e-54 213.8 103 96.1
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 3.1e-48 194.9 99 89.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 4.1e-45 184.5 99 85.9
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-43 179.1 99 81.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 3.0e-43 178.3 103 82.5
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.5e-42 176.0 99 80.8
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.3e-42 174.9 104 81.7
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.6e-41 172.6 99 78.8
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.6e-41 172.6 103 80.6
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.7e-41 171.0 99 78.8
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 6.2e-41 170.6 99 77.8
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.1e-40 169.9 99 74.7
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.4e-40 169.5 99 76.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.4e-40 169.5 99 79.8
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.4e-40 169.5 98 77.6
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.3e-40 168.7 100 79.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.3e-40 168.7 99 75.8
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 2.3e-40 168.7 99 79.8
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.1e-40 168.3 99 74.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 4.0e-40 167.9 103 75.7
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.0e-40 167.9 103 75.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.0e-40 167.9 99 76.8
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.2e-40 167.5 103 75.7
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 5.2e-40 167.5 103 74.8
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.2e-39 166.4 103 78.6
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.2e-39 166.4 99 72.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-39 166.0 103 74.8
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.5e-39 166.0 103 74.8
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-39 166.0 94 78.7
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.5e-39 166.0 94 78.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.6e-39 165.2 99 77.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 7.5e-39 163.7 101 77.2
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.7e-38 161.4 99 74.7
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.4e-37 159.5 103 70.9
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.4e-37 159.5 99 75.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.4e-37 158.7 103 69.9
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.2e-37 158.3 103 69.9
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.2e-37 158.3 99 72.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.2e-37 158.3 99 70.7
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 5.4e-37 157.5 88 81.8
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.4e-37 157.5 99 74.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 7.0e-37 157.1 99 70.7
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 7.0e-37 157.1 99 74.7
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.2e-36 156.4 103 68.9
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.6e-36 156.0 103 68.0
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-36 155.6 99 73.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.1e-36 155.6 103 72.8
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 3.5e-36 154.8 99 73.7
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 4.6e-36 154.5 99 74.7
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.6e-36 154.5 98 74.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 4.6e-36 154.5 103 73.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 6.0e-36 154.1 100 73.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.0e-36 154.1 100 73.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 7.8e-36 153.7 103 68.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.3e-35 152.9 103 67.0
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.7e-35 152.5 98 73.5
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.7e-35 152.5 89 76.4
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 3.9e-35 151.4 103 72.8
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 5.1e-35 151.0 102 69.6
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 6.6e-35 150.6 98 73.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 8.6e-35 150.2 102 71.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.5e-34 149.4 98 71.4
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.5e-34 149.4 99 73.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 68.9
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.9e-34 149.1 103 68.9
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.9e-34 149.1 102 70.6
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.9e-34 149.1 101 66.3
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.3e-34 148.3 102 67.6
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.3e-34 148.3 99 69.7
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 3.3e-34 148.3 89 77.5
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.6e-34 147.5 96 72.9
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 7.3e-34 147.1 99 68.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.3e-34 147.1 96 67.7
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.2e-33 146.4 131 56.5
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.2e-33 146.4 102 70.6
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.6e-33 146.0 99 68.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.6e-33 146.0 102 69.6
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.1e-33 145.6 95 70.5
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.6e-33 144.8 100 71.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 4.7e-33 144.4 104 68.3
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.2e-33 144.1 99 70.7
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.2e-33 144.1 99 70.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 8.1e-33 143.7 98 70.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 8.1e-33 143.7 98 70.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-32 142.9 103 62.1
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.8e-32 142.5 99 66.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.1e-32 141.7 99 68.7
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 5.2e-32 141.0 103 61.2
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 8.9e-32 140.2 102 66.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 8.9e-32 140.2 103 70.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.2e-31 139.8 99 63.6
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.0e-31 139.0 89 73.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.6e-31 138.7 90 73.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.4e-31 138.3 101 64.4
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 3.4e-31 138.3 100 67.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 4.4e-31 137.9 100 67.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 7.5e-31 137.1 100 65.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 9.9e-31 136.7 101 67.3
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 9.9e-31 136.7 101 67.3
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.3e-30 136.3 102 65.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.7e-30 136.0 102 66.7
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 2.2e-30 135.6 103 66.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.2e-30 135.6 100 67.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 3.7e-30 134.8 100 66.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.7e-30 134.8 89 73.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.9e-29 132.5 73 76.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.4e-29 132.1 89 74.2
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.2e-28 129.8 91 71.4
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.2e-28 129.8 107 62.6
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-28 129.4 100 65.0
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.1e-28 129.0 102 67.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 2.7e-28 128.6 99 63.6
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 3.5e-28 128.3 101 65.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.6e-28 127.9 88 64.8
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 7.8e-28 127.1 79 73.4
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.0e-27 126.7 89 67.4
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.3e-27 126.3 91 69.2
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 3.9e-27 124.8 91 68.1
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 6.6e-27 124.0 84 69.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.1e-26 123.2 98 60.2
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 9.5e-26 120.2 100 62.0
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.1e-25 119.0 92 64.1
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.1e-25 119.0 82 63.4
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.8e-24 114.0 91 62.6
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.9e-22 108.6 80 62.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.8e-22 108.2 91 61.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 8.4e-22 107.1 106 51.9
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.2e-21 104.8 91 61.5
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 7.1e-21 104.0 74 70.3
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.1e-21 104.0 95 56.8
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.7e-19 99.4 50 82.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 8.7e-19 97.1 79 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.1e-18 96.7 106 52.8
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.3e-18 94.7 75 62.7
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.6e-17 91.7 74 62.2
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.8e-17 91.3 110 49.1
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.2e-17 90.9 76 61.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.1e-17 90.5 74 64.9
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.5e-15 86.3 67 65.7
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.8e-15 84.3 77 58.4
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.1e-13 80.1 100 46.0
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.3e-13 77.0 80 48.8
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 9.3e-13 77.0 49 65.3
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.0e-11 73.6 91 50.5
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.3e-11 72.4 90 44.4
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 2.5e-10 68.9 52 69.2
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 2.5e-10 68.9 52 69.2
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 7.3e-10 67.4 40 70.0
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.1e-08 63.5 85 41.2
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 1.8e-08 62.8 56 51.8
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 4.0e-08 61.6 92 38.0
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.9e-06 55.5 42 59.5


User provided reference genes

Program Settings