Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 5.2e-108 394.4 204 100.0
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 1.1e-86 323.6 204 83.3
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 2.9e-82 308.9 205 79.5
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 1.4e-81 306.6 204 75.5
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 1.2e-80 303.5 208 76.4
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 4.3e-78 295.0 207 73.4
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 6.2e-77 291.2 204 73.5
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 1.4e-76 290.0 203 73.9
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 2.4e-76 289.3 204 73.0
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.3e-74 283.5 205 71.7
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 5.4e-65 251.5 164 75.0
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 5.6e-62 241.5 204 63.2
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 6.9e-60 234.6 188 62.8
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 1.2e-59 233.8 189 63.0
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.5e-59 233.4 201 61.2
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 4.5e-59 231.9 207 60.4
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 5.8e-59 231.5 197 62.9
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 7.6e-59 231.1 197 62.9
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 7.6e-59 231.1 186 63.4
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 9.9e-59 230.7 189 58.2
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.2e-58 229.6 204 59.8
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.2e-58 229.6 189 57.7
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 2.9e-58 229.2 228 56.6
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 2.9e-58 229.2 204 61.3
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 4.9e-58 228.4 192 62.0
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.4e-57 226.9 188 65.4
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 1.9e-57 226.5 171 63.7
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 4.2e-57 225.3 185 62.7
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 7.1e-57 224.6 185 60.0
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 7.1e-57 224.6 185 62.7
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 9.3e-57 224.2 201 61.2
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 1.2e-56 223.8 189 61.4
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 1.6e-56 223.4 183 63.9
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 4.6e-56 221.9 177 62.7
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 4.6e-56 221.9 187 63.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 4.6e-56 221.9 186 64.5
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 1.0e-55 220.7 186 64.0
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.0e-55 220.7 189 58.7
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 1.8e-55 219.9 187 61.0
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 2.3e-55 219.5 204 54.4
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.3e-55 219.5 183 62.8
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 3.9e-55 218.8 204 55.4
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 6.7e-55 218.0 190 56.3
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 8.7e-55 217.6 204 53.9
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 8.7e-55 217.6 204 57.8
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.9e-54 216.5 192 59.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 2.5e-54 216.1 184 61.4
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 5.6e-54 214.9 212 57.1
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 5.6e-54 214.9 179 62.0
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 7.4e-54 214.5 194 56.7
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 9.6e-54 214.2 195 57.9
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 2.1e-53 213.0 193 56.0
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 2.1e-53 213.0 204 57.8
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 6.2e-53 211.5 233 50.6
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 8.1e-53 211.1 186 60.2
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.1e-52 210.7 177 61.6
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 1.8e-52 209.9 181 56.9
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 3.1e-52 209.1 204 57.8
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.0e-52 208.8 207 56.5
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 5.3e-52 208.4 197 57.9
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 6.9e-52 208.0 205 55.6
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.5e-51 206.8 203 53.7
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 4.5e-51 205.3 178 57.9
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.3e-50 203.8 183 56.3
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 3.2e-49 199.1 191 54.5
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 5.5e-49 198.4 190 54.7
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 7.1e-49 198.0 201 52.7
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 2.1e-48 196.4 204 52.5
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 4.6e-48 195.3 211 50.2
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 7.9e-48 194.5 186 55.4
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 1.0e-47 194.1 192 53.1
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 1.8e-47 193.4 186 54.3
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 6.7e-47 191.4 182 56.0
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 1.1e-46 190.7 193 53.9
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 2.1e-45 186.4 187 54.0
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.1e-44 184.1 176 52.8
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.0e-43 179.9 175 52.0
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.6e-43 179.5 175 51.4
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 5.9e-43 178.3 179 54.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 3.2e-41 172.6 184 49.5
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 2.1e-40 169.9 202 49.0
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 3.6e-40 169.1 185 52.4
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 7.4e-38 161.4 173 52.0
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 9.7e-38 161.0 111 73.0
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 1.3e-37 160.6 186 46.2
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 2.8e-37 159.5 192 48.4
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 3.7e-37 159.1 173 51.4
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 3.7e-37 159.1 173 52.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 8.2e-37 157.9 197 47.2
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.8e-36 156.8 174 51.7
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 1.8e-36 156.8 174 51.7
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 6.9e-36 154.8 189 48.1
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 9.0e-36 154.5 195 47.7
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.8e-34 149.1 176 48.9
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 5.0e-34 148.7 189 48.1
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 5.0e-34 148.7 176 48.9
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.5e-33 146.4 163 49.1
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 3.2e-33 146.0 157 51.6
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 9.4e-33 144.4 176 47.2
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 2.7e-32 142.9 176 46.6
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 4.6e-32 142.1 176 46.6
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 4.6e-32 142.1 176 46.6
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 4.6e-32 142.1 176 46.6
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 4.6e-32 142.1 176 46.6
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 7.9e-32 141.4 164 49.4
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 3.9e-31 139.0 111 65.8
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 5.1e-31 138.7 128 55.5
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 8.8e-31 137.9 95 68.4
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 6.9e-28 128.3 175 41.1
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 1.1e-25 120.9 135 48.9
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 5.3e-20 102.1 186 38.2
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 1.9e-17 93.6 193 34.7
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.6e-16 90.5 100 49.0
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 3.6e-16 89.4 185 33.0
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.4e-12 77.4 121 41.3
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 8.0e-08 61.6 39 71.8
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 6.8e-07 58.5 189 25.4


User provided reference genes

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