Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 0.0e+00 1212.6 619 100.0
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 0.0e+00 1135.2 620 94.2
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 0.0e+00 1133.2 620 93.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 0.0e+00 1076.6 619 88.7
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 1.4e-310 1068.9 625 87.5
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.3e-308 1061.6 619 87.9
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.4e-302 1042.3 624 85.4
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 620 85.3
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 620 85.3
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.7e-298 1027.7 620 85.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 9.0e-297 1023.1 620 84.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.0e-296 1021.9 619 83.8
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.6e-296 1021.5 619 84.0
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.0e-295 1019.6 620 84.4
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.2e-295 1018.5 620 84.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 2.5e-294 1015.0 620 83.9
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 4.2e-294 1014.2 620 83.9
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.2e-294 1013.4 619 83.5
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 1.2e-293 1012.7 619 83.7
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.6e-293 1012.3 626 82.6
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.6e-293 1012.3 620 84.0
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.5e-291 1005.7 620 83.4
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.3e-291 1004.6 630 81.7
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 7.4e-291 1003.4 620 83.1
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 4.1e-289 997.7 616 82.5
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 6.9e-289 996.9 619 82.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.6e-288 995.0 620 82.3
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 7.7e-288 993.4 619 81.7
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.1e-286 989.6 620 81.8
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 2.7e-285 984.9 616 81.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 5.1e-284 980.7 619 80.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 5.1e-284 980.7 618 82.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.1e-283 979.5 619 81.7
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.6e-283 978.4 620 81.3
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 3.3e-283 978.0 643 78.7
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 4.4e-283 977.6 620 80.8
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 9.7e-283 976.5 619 81.1
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 2.8e-282 974.9 619 79.8
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.1e-281 973.0 618 79.4
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 3.5e-280 968.0 686 75.1
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.5e-280 968.0 620 80.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 6.5e-279 963.8 658 76.6
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 5.5e-278 960.7 620 79.7
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 3.6e-277 958.0 619 78.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 2.2e-274 948.7 620 78.9
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.2e-274 948.7 623 78.3
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 4.8e-274 947.6 615 77.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 6.3e-274 947.2 619 77.7
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.8e-273 945.7 580 84.8
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 2.4e-273 945.3 615 77.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.3e-271 939.5 619 76.7
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.9e-270 935.6 625 79.0
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 7.2e-270 933.7 619 76.6
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.7e-269 931.8 618 77.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 1.4e-268 929.5 618 76.9
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 5.2e-268 927.5 618 76.4
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 5.2e-268 927.5 618 76.2
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.2e-268 927.5 618 77.0
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.5e-267 926.0 646 73.7
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.5e-267 926.0 618 76.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.6e-267 925.2 618 76.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.6e-267 925.2 609 76.8
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.8e-266 921.8 618 76.2
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.8e-266 921.0 755 66.9
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 2.0e-264 915.6 619 75.3
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.0e-263 913.3 611 75.1
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.9e-262 909.1 651 72.7
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.6e-261 904.8 631 74.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 3.0e-260 901.7 616 74.7
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.0e-260 901.4 620 74.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 5.2e-260 901.0 616 75.3
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.2e-260 901.0 616 74.5
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.5e-259 899.4 618 74.8
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 2.2e-258 895.6 619 73.8
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 8.3e-258 893.6 618 72.8
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.5e-256 888.3 616 74.2
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.5e-256 888.3 543 83.1
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 8.0e-253 877.1 616 73.4
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.7e-251 870.9 618 72.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.2e-250 869.0 619 72.2
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 6.4e-250 867.5 576 76.6
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 8.3e-250 867.1 575 77.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 3.5e-248 861.7 601 73.5
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 4.6e-248 861.3 518 83.4
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.3e-246 855.1 518 83.6
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.6e-245 852.8 603 72.8
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.0e-245 850.5 619 71.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.4e-244 849.7 635 70.4
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 2.0e-243 845.9 641 70.4
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.2e-240 836.6 617 69.5
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 7.5e-235 817.4 618 69.7
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.6e-232 808.1 515 81.4
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.8e-228 796.2 618 66.3
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 5.1e-215 751.5 617 60.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 8.1e-213 744.2 448 85.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-211 739.6 559 70.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.7e-210 736.5 468 78.4
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.9e-207 725.3 621 58.8
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 6.7e-207 724.5 532 72.9
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 9.6e-198 694.1 616 57.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 7.2e-185 651.4 651 52.2
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 2.2e-165 586.6 366 82.8
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 7.5e-158 561.6 344 85.5
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 4.8e-157 558.9 490 65.7
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.1e-156 557.8 397 77.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 9.4e-153 544.7 362 79.6
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.7e-152 542.3 618 47.7
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.7e-146 523.9 618 46.0
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.2e-135 485.7 364 68.1
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.3e-122 443.7 599 45.1
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 7.5e-118 428.7 513 44.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.4e-111 407.1 370 63.8
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.3e-105 386.7 284 74.6
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.4e-100 370.5 459 51.2
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.0e-74 283.9 175 80.6
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 7.4e-73 279.3 171 81.3
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.6e-67 261.5 186 67.2
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.5e-61 239.6 134 90.3
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.5e-61 239.2 148 84.5
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.6e-57 227.6 144 80.6
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 5.2e-50 203.4 119 80.7
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 2.4e-47 194.5 151 66.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 3.1e-47 194.1 122 79.5
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.2e-43 182.2 178 57.3
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.7e-43 181.0 105 81.9
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.3e-42 177.9 107 78.5
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-41 175.6 105 87.6
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.8e-39 168.3 137 64.2
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 2.7e-38 164.5 100 88.0
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-31 140.6 86 83.7
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.0e-29 133.7 74 91.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.8e-26 125.2 106 56.6
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.5e-25 122.1 59 91.5
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.5e-25 122.1 59 91.5
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.1e-23 114.4 84 71.4
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-21 107.8 58 81.0
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 3.3e-20 104.4 117 55.6
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 7.3e-20 103.2 50 96.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 9.5e-20 102.8 59 72.9
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 9.5e-20 102.8 59 72.9
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.2e-19 102.4 76 67.1
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.6e-19 102.1 56 85.7
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.6e-12 77.0 53 60.4
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 7.3e-12 76.6 51 60.8
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 8.0e-11 73.2 43 72.1
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-10 72.8 80 50.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 7.5e-09 66.6 48 72.9
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-07 62.8 38 73.7
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.5e-06 57.8 40 70.0


User provided reference genes

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