Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G143100 Glycine max HOM05D006567 ORTHO05D009430 1.4e-107 392.9 193 100.0
Glyma.05G061300 Glycine max HOM05D006567 ORTHO05D009430 1.5e-96 356.3 185 95.1
VMungo0251G1330 Vigna mungo HOM05D006567 ORTHO05D009430 2.6e-93 345.5 183 90.2
Phvul.003G221900 Phaseolus vulgaris HOM05D006567 ORTHO05D009430 3.8e-92 341.7 180 89.4
Lalb_Chr05g0221201 Lupinus albus HOM05D006567 ORTHO05D009430 9.3e-91 337.0 180 87.8
Ca_21975_v3 Cicer arietinum L. HOM05D006567 ORTHO05D009430 1.3e-89 333.2 184 87.5
Lj4g0021343 Lotus japonicus HOM05D006567 ORTHO05D009430 1.3e-89 333.2 180 87.8
MD04G1062400 Malus domestica HOM05D006567 ORTHO05D009430 1.1e-88 330.1 185 84.3
Medtr4g100760 Medicago truncatula HOM05D006567 ORTHO05D009430 2.5e-88 328.9 181 86.2
QL12p011664 Quercus lobata HOM05D006567 ORTHO05D009430 3.3e-88 328.6 189 84.1
Psat4g072680 Pisum sativum HOM05D006567 ORTHO05D009430 4.3e-88 328.2 180 86.7
TPR.G37608 Trifolium pratense HOM05D006567 ORTHO05D009430 5.7e-88 327.8 184 84.8
arahy.Tifrunner.gnm1.ann1.E0WBQ7 Arachis hypogaea HOM05D006567 ORTHO05D009430 9.6e-88 327.0 182 85.7
RcHm_v2.0_Chr7g0203711 Rosa chinensis HOM05D006567 ORTHO05D009430 9.6e-88 327.0 180 85.0
arahy.Tifrunner.gnm1.ann1.69E4XE Arachis hypogaea HOM05D006567 ORTHO05D009430 1.3e-87 326.6 182 85.7
Prupe.5G066000 Prunus persica HOM05D006567 ORTHO05D009430 3.7e-87 325.1 185 83.2
COL.COLO4_37145 Corchorus olitorius HOM05D006567 ORTHO05D009430 1.8e-86 322.8 182 83.0
FvH4_5g19170 Fragaria vesca HOM05D006567 ORTHO05D009430 9.0e-86 320.5 179 82.1
FAN08G1209 Fragaria x ananassa HOM05D006567 ORTHO05D009430 1.2e-85 320.1 184 80.4
Gorai.008G234200 Gossypium raimondii HOM05D006567 ORTHO05D009430 1.2e-85 320.1 185 82.7
Gohir.D12G218600 Gossypium hirsutum HOM05D006567 ORTHO05D009430 3.4e-85 318.5 185 81.6
FAN04G2727 Fragaria x ananassa HOM05D006567 ORTHO05D009430 4.5e-85 318.2 184 80.4
TAR636G1533 Trochodendron aralioides HOM05D006567 ORTHO05D009430 4.5e-85 318.2 180 84.4
Actinidia14413 Actinidia chinensis HOM05D006567 ORTHO05D009430 5.8e-85 317.8 185 80.0
FAN18G0654 Fragaria x ananassa HOM05D006567 ORTHO05D009430 7.6e-85 317.4 184 79.3
Cfa015824 Carpinus fangiana HOM05D006567 ORTHO05D009430 6.5e-84 314.3 179 82.7
Thecc.03G249000 Theobroma cacao HOM05D006567 ORTHO05D009430 1.4e-83 313.2 185 81.1
Cpa.g.sc29.179 Carica papaya HOM05D006567 ORTHO05D009430 2.5e-83 312.4 184 79.3
Gohir.A12G216000 Gossypium hirsutum HOM05D006567 ORTHO05D009430 2.5e-83 312.4 191 79.6
Duzib084G0744 Durio zibethinus HOM05D006567 ORTHO05D009430 3.2e-83 312.0 185 78.9
PGR031G0713 Punica granatum HOM05D006567 ORTHO05D009430 7.1e-83 310.8 179 80.4
Hund11604 Selenicereus undatus HOM05D006567 ORTHO05D009430 9.3e-83 310.5 179 80.4
vmacro00188 Vaccinium macrocarpon HOM05D006567 ORTHO05D009430 9.3e-83 310.5 180 80.6
CsaV3_5G004320 Cucumis sativus L. HOM05D006567 ORTHO05D009430 1.6e-82 309.7 179 81.6
Atru.chr9.1289 Acer truncatum HOM05D006567 ORTHO05D009430 2.1e-82 309.3 179 80.4
MSTRG.12113 Avicennia marina HOM05D006567 ORTHO05D009430 4.6e-82 308.1 185 78.9
Aqoxy7G00822 Aquilegia oxysepala HOM05D006567 ORTHO05D009430 6.1e-82 307.8 179 79.9
Sabra03G0048700 Salix brachista HOM05D006567 ORTHO05D009430 6.1e-82 307.8 179 81.0
CANSAT21G0369 Cannabis sativa HOM05D006567 ORTHO05D009430 7.9e-82 307.4 185 78.4
MELO3C005521.2 Cucumis melo HOM05D006567 ORTHO05D009430 1.0e-81 307.0 179 81.0
Sc07g0009260 Simmondsia chinensis HOM05D006567 ORTHO05D009430 1.8e-81 306.2 182 79.1
Eucgr.D02095 Eucalyptus grandis HOM05D006567 ORTHO05D009430 3.0e-81 305.4 185 78.4
CSS0024870 Camellia sinensis var. sinensis HOM05D006567 ORTHO05D009430 6.7e-81 304.3 181 79.0
Potri.003G078500 Populus trichocarpa HOM05D006567 ORTHO05D009430 6.7e-81 304.3 179 78.8
SalBow6G6157 Salvia bowleyana HOM05D006567 ORTHO05D009430 8.7e-81 303.9 179 76.5
Cc08_g12240 Coffea canephora HOM05D006567 ORTHO05D009430 1.9e-80 302.8 180 78.9
Ciclev10020637m.g Citrus clementina HOM05D006567 ORTHO05D009430 2.5e-80 302.4 185 77.8
TWI81G0123 Tripterygium wilfordii HOM05D006567 ORTHO05D009430 4.3e-80 301.6 180 78.9
HanXRQChr13g0417851 Helianthus annuus HOM05D006567 ORTHO05D009430 7.4e-80 300.8 183 74.3
ECA240G4587 Erigeron canadensis HOM05D006567 ORTHO05D009430 9.7e-80 300.4 180 76.1
Haze_00669 Corylus avellana HOM05D006567 ORTHO05D009430 1.3e-79 300.1 210 71.0
Nn1g00949 Nelumbo nucifera HOM05D006567 ORTHO05D009430 3.7e-79 298.5 185 76.2
Lsat_1_v5_gn_6_92541 Lactuca sativa HOM05D006567 ORTHO05D009430 4.8e-79 298.1 183 75.4
MBI04_g09522_MAGBIO Magnolia biondii HOM05D006567 ORTHO05D009430 2.4e-78 295.8 181 76.2
Sed0022818 Sechium edule HOM05D006567 ORTHO05D009430 2.4e-78 295.8 184 77.2
DCAR_004966 Daucus carota HOM05D006567 ORTHO05D009430 3.1e-78 295.4 180 78.3
Peaxi162Scf00209g00122 Petunia axillaris HOM05D006567 ORTHO05D009430 5.3e-78 294.7 180 75.6
AT4G17370 Arabidopsis thaliana HOM05D006567 ORTHO05D009430 6.9e-78 294.3 182 74.2
Ah.12g054200 Amaranthus hybridus HOM05D006567 ORTHO05D006679 9.0e-78 293.9 179 76.0
Migut.A01121 Erythranthe guttata HOM05D006567 ORTHO05D009430 3.4e-77 292.0 180 75.6
Rhsim09G0000200 Rhododendron simsii HOM05D006567 ORTHO05D009430 3.4e-77 292.0 224 65.6
Carub.0007s2404 Capsella rubella HOM05D006567 ORTHO05D009430 4.5e-77 291.6 180 75.0
Solyc08g078460.3 Solanum lycopersicum HOM05D006567 ORTHO05D009430 4.5e-77 291.6 180 75.0
unitig_899.g15594 Utricularia gibba HOM05D006567 ORTHO05D009430 4.5e-77 291.6 179 75.4
Sopen08g026950 Solanum pennellii HOM05D006567 ORTHO05D009430 1.0e-76 290.4 180 74.4
PGSC0003DMG400004822 Solanum tuberosum HOM05D006567 ORTHO05D009430 1.0e-76 290.4 180 74.4
SGA_v2.0_scaffold26G11306 Striga asiatica HOM05D006567 ORTHO05D009430 1.7e-76 289.7 180 72.8
CAN.G1178.26 Capsicum annuum HOM05D006567 ORTHO05D009430 2.2e-76 289.3 182 73.6
Thhalv10025513m.g Eutrema salsugineum HOM05D006567 ORTHO05D009430 2.2e-76 289.3 182 72.5
CARHR223980 Cardamine hirsuta HOM05D006567 ORTHO05D009430 2.9e-76 288.9 180 72.8
AL7G37340 Arabidopsis lyrata HOM05D006567 ORTHO05D009430 3.8e-76 288.5 178 74.7
A03p50390 Brassica napus HOM05D006567 ORTHO05D009430 8.5e-76 287.3 185 71.9
ClCG01G004160 Citrullus lanatus HOM05D006567 ORTHO05D009430 1.1e-75 287.0 194 74.2
Nitab4.5_0001381g0120 Nicotiana tabacum HOM05D006567 ORTHO05D009430 2.5e-75 285.8 181 74.0
BcaNung03466 Brassica carinata HOM05D006567 ORTHO05D009430 3.2e-75 285.4 184 71.7
THA.LOC104806666 Tarenaya hassleriana HOM05D006567 ORTHO05D009430 3.2e-75 285.4 180 72.8
BraA03t14129Z Brassica rapa HOM05D006567 ORTHO05D009430 4.2e-75 285.0 185 71.4
Aa31LG1G23140 Aethionema arabicum HOM05D006567 ORTHO05D009430 5.5e-75 284.6 180 73.9
AUR62019967 Chenopodium quinoa HOM05D006567 ORTHO05D009430 5.5e-75 284.6 170 77.1
AUR62007104 Chenopodium quinoa HOM05D006567 ORTHO05D009430 9.4e-75 283.9 170 76.5
BolC7t45378H Brassica oleracea HOM05D006567 ORTHO05D009430 2.7e-74 282.3 184 70.7
Sp7g16810 Schrenkiella parvula HOM05D006567 ORTHO05D009430 2.7e-74 282.3 180 72.2
EL10Ac5g12369 Beta vulgaris HOM05D006567 ORTHO05D009430 1.4e-73 280.0 179 75.4
EL10Ac5g12374 Beta vulgaris HOM05D006567 ORTHO05D009430 1.8e-73 279.6 179 75.4
PSO017G4082 Papaver somniferum HOM05D006567 ORTHO05D009430 3.3e-72 275.4 188 70.2
PSO170G1323 Papaver somniferum HOM05D006567 ORTHO05D009430 9.7e-72 273.9 183 69.9
ATR0057G105 Amborella trichopoda HOM05D006567 ORTHO05D009430 1.7e-71 273.1 182 70.9
Nitab4.5_0002289g0070 Nicotiana tabacum HOM05D006567 ORTHO05D009430 8.2e-71 270.8 180 71.1
HPP92_025881 Vanilla planifolia HOM05D006567 ORTHO05D009430 1.0e-68 263.8 180 69.4
SEGI_34288 Sequoiadendron giganteum HOM05D006567 ORTHO05D009430 2.9e-68 262.3 180 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3639 Anthoceros agrestis HOM05D006567 ORTHO05D009430 7.2e-59 231.1 182 63.2
SMO228G0171 Selaginella moellendorffii HOM05D006567 ORTHO05D009430 6.1e-58 228.0 182 62.6
Mapoly0040s0044 Marchantia polymorpha HOM05D006567 ORTHO05D009430 4.8e-55 218.4 182 57.7
Pp3c4_15440 Physcomitrium patens HOM05D006567 ORTHO05D009430 1.1e-54 217.2 185 58.9
CiPaw.11G081200 Carya illinoinensis HOM05D006567 ORTHO05D009430 1.3e-52 210.3 117 84.6
FvH4_5g07380 Fragaria vesca HOM05D006567 ORTHO05D015939 3.6e-50 202.2 118 78.0
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 3.6e-50 202.2 124 78.2
QL08p052096 Quercus lobata HOM05D006567 ORTHO05D015939 4.7e-50 201.8 112 83.0
Os08g0148267 Oryza sativa ssp. japonica HOM05D006567 ORTHO05D009430 1.0e-49 200.7 121 76.9
FvH4_3g36620 Fragaria vesca HOM05D006567 ORTHO05D015939 2.8e-47 192.6 117 75.2
FAN04G0922 Fragaria x ananassa HOM05D006567 ORTHO05D015939 8.3e-47 191.0 130 70.0
FAN09G0929 Fragaria x ananassa HOM05D006567 ORTHO05D015939 1.8e-46 189.9 117 74.4
FAN22G0783 Fragaria x ananassa HOM05D006567 ORTHO05D015939 1.8e-46 189.9 117 74.4
FAN27G0484 Fragaria x ananassa HOM05D006567 ORTHO05D015939 6.5e-44 181.4 130 67.7
Manes.01G082300 Manihot esculenta HOM05D006567 ORTHO05D009430 1.5e-40 170.2 101 78.2
Dinv39160 Davidia involucrata HOM05D006567 ORTHO05D009430 5.7e-40 168.3 101 76.2
Zm00001eb416490 Zea mays HOM05D006567 ORTHO05D009430 2.5e-35 152.9 124 61.3
BcaC06g33542 Brassica carinata HOM05D006567 ORTHO05D015939 2.3e-33 146.4 101 67.3
Lj2C221T14 Lonicera japonica HOM05D006567 ORTHO05D009430 2.3e-20 103.2 57 84.2
FAN28G1973 Fragaria x ananassa HOM05D006567 ORTHO05D015939 2.8e-18 96.3 69 66.7
GSVIVG01004725001 Vitis vinifera HOM05D006567 ORTHO05D009430 5.8e-16 88.6 46 84.8
TPR.G40300 Trifolium pratense HOM05D006567 ORTHO05D412752 5.1e-12 75.5 54 68.5
TPR.G24425 Trifolium pratense HOM05D006567 ORTHO05D411483 8.6e-12 74.7 54 66.7
TPR.G2696 Trifolium pratense HOM05D006567 ORTHO05D411767 1.1e-11 74.3 54 68.5
TPR.G2679 Trifolium pratense HOM05D006567 ORTHO05D412848 6.2e-10 68.6 54 63.0
AL7G37260 Arabidopsis lyrata HOM05D006567 ORTHO05D015939 8.9e-09 64.7 43 67.4
BcaC06g33541 Brassica carinata HOM05D006567 ORTHO05D009430 2.2e-07 60.1 30 80.0
EL10Ac4g09527 Beta vulgaris HOM05D006567 ORTHO05D010541 8.4e-07 58.2 34 79.4


User provided reference genes

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