Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.6e-80 302.8 161 100.0
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.6e-67 259.6 150 93.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 9.0e-63 243.8 150 87.3
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.0e-58 230.3 135 89.6
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 7.6e-46 187.6 131 80.2
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 7.6e-46 187.6 131 80.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.2e-44 181.8 145 69.7
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 9.3e-44 180.6 151 72.8
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.1e-43 179.5 155 69.7
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 4.6e-43 178.3 147 70.7
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 6.0e-43 177.9 155 65.2
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.0e-42 177.2 142 70.4
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 3.0e-42 175.6 146 67.8
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 3.0e-42 175.6 168 62.5
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 5.1e-42 174.9 146 69.9
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 6.7e-42 174.5 147 68.0
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-41 173.7 147 68.7
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 1.5e-41 173.3 134 73.1
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.9e-41 172.9 150 67.3
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 4.3e-41 171.8 146 70.5
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.6e-41 171.4 146 69.9
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 9.6e-41 170.6 144 69.4
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 9.6e-41 170.6 143 67.8
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.3e-40 170.2 138 71.7
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.6e-40 169.9 149 69.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.1e-40 169.5 147 68.0
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 8.2e-40 167.5 145 68.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.4e-39 166.8 147 65.3
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.8e-39 166.4 149 66.4
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.4e-39 166.0 142 68.3
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 9.0e-39 164.1 145 64.1
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 9.0e-39 164.1 139 69.1
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.2e-38 163.7 147 66.0
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.2e-38 163.7 142 66.9
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.2e-38 163.7 139 67.6
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 2.0e-38 162.9 139 65.5
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.5e-38 161.8 151 64.2
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 5.8e-38 161.4 141 64.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.8e-38 161.4 141 67.4
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 7.6e-38 161.0 142 66.9
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.6e-38 161.0 140 67.9
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.0e-37 160.6 143 65.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.3e-37 160.2 145 64.1
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.9e-37 159.1 140 65.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.9e-37 159.1 150 62.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 3.8e-37 158.7 144 62.5
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 4.9e-37 158.3 142 65.5
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.5e-37 157.9 145 65.5
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 6.5e-37 157.9 181 54.7
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 8.4e-37 157.5 173 58.4
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.1e-36 157.1 147 62.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.4e-36 156.8 150 60.0
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.5e-36 156.0 141 67.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 3.2e-36 155.6 150 62.7
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.2e-36 155.6 145 61.4
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-36 155.2 140 67.1
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 7.1e-36 154.5 141 67.4
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 7.1e-36 154.5 141 67.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.2e-35 153.7 159 59.7
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.5e-35 152.1 144 63.9
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 6.0e-35 151.4 139 66.9
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 7.9e-35 151.0 142 65.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-34 150.2 146 63.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 3.9e-34 148.7 154 60.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 5.1e-34 148.3 151 63.6
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.7e-34 147.5 147 63.9
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 8.7e-34 147.5 145 59.3
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 8.7e-34 147.5 145 59.3
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.5e-33 146.7 144 64.6
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 4.3e-33 145.2 154 61.0
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.3e-33 145.2 144 63.9
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.4e-33 144.4 144 63.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 7.4e-33 144.4 148 60.8
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.7e-33 144.1 144 64.6
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.6e-32 143.3 146 62.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.8e-32 142.5 148 62.2
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 3.7e-32 142.1 156 56.4
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 6.3e-32 141.4 148 61.5
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 8.2e-32 141.0 150 58.7
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.8e-31 139.8 113 69.9
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 1.8e-31 139.8 145 60.7
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.3e-31 138.3 142 59.9
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.2e-30 137.1 147 58.5
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.5e-30 136.7 135 62.2
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.6e-30 136.0 143 58.0
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.0e-29 134.0 141 59.6
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 3.8e-29 132.1 160 55.6
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 6.5e-29 131.3 141 56.0
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-28 130.6 141 55.3
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 5.5e-28 128.3 147 55.8
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 9.3e-28 127.5 116 67.2
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.1e-27 126.3 173 50.9
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 2.7e-27 125.9 185 47.0
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 3.6e-27 125.6 148 56.8
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 3.6e-27 125.6 157 55.4
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 4.6e-27 125.2 147 56.5
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.9e-27 124.4 122 64.8
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.8e-26 123.2 147 54.4
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.0e-26 122.5 137 57.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 6.7e-26 121.3 151 50.3
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-25 119.4 150 56.0
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.3e-25 118.6 141 52.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 5.7e-25 118.2 118 61.0
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.4e-25 117.9 142 54.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 9.7e-25 117.5 133 56.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.7e-24 116.7 151 53.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 2.8e-24 115.9 118 60.2
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 3.7e-24 115.5 116 60.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 8.2e-24 114.4 148 50.7
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 8.2e-24 114.4 148 50.7
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.8e-23 113.2 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 3.1e-23 112.5 147 45.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 2.6e-22 109.4 174 50.6
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.0e-21 107.5 70 75.7
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.1e-20 104.0 148 50.7
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 7.2e-20 101.3 108 59.3
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.7e-19 99.4 95 61.1
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.8e-18 96.7 125 52.0
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.3e-18 96.3 87 59.8
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.0e-18 95.9 151 45.0
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.1e-17 94.0 108 55.6
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.0e-17 93.2 104 61.5
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 4.8e-16 88.6 141 44.7
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.3e-16 88.2 85 64.7
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.1e-15 87.4 71 64.8
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.4e-15 86.3 89 62.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 4.1e-15 85.5 147 40.1
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.2e-14 84.0 99 50.5
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.0e-14 83.2 135 48.9
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.4e-12 77.0 153 38.6
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-12 77.0 73 57.5
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-12 75.9 77 55.8
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-12 75.9 77 55.8
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.2e-12 75.9 77 55.8
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 5.5e-12 75.1 97 55.7
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 7.2e-12 74.7 81 59.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.2e-11 73.9 161 38.5
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.1e-11 71.6 55 67.3
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 5.2e-10 68.6 60 70.0
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 6.7e-10 68.2 85 58.8
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.6e-09 66.2 55 61.8
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 7.4e-09 64.7 144 36.8
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 1.1e-07 60.8 86 51.2
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 2.4e-07 59.7 48 60.4
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.6e-06 57.0 55 56.4
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 2.6e-06 56.2 59 47.5
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-06 55.5 48 60.4
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 7.7e-06 54.7 66 53.0


User provided reference genes

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