Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1459.1 756 100.0
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1394.4 756 95.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1385.5 756 94.4
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1382.5 756 94.6
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1333.2 756 90.3
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1331.6 756 90.6
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1288.5 756 88.8
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1274.6 756 86.9
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1274.2 753 86.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1270.4 753 86.7
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1189.5 758 80.6
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1179.5 758 80.1
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1177.5 758 79.9
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1166.8 749 78.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1165.6 775 77.3
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1139.0 759 76.4
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1137.5 756 75.9
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1134.8 757 76.0
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1130.5 758 75.6
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1130.5 759 76.2
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1125.9 759 75.8
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1124.4 756 75.1
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1123.6 770 74.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1120.9 770 74.7
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1118.6 756 75.0
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1117.8 746 76.3
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1112.4 758 74.5
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1111.7 758 74.7
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1109.4 762 75.1
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1108.2 756 75.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1107.4 758 74.4
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 756 73.8
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1102.8 751 75.4
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1102.4 755 74.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1101.7 751 74.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1101.7 749 76.2
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1101.3 766 73.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1097.0 756 73.0
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1096.3 758 73.4
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 0.0e+00 1095.1 634 88.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1091.3 758 74.1
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1085.1 754 73.1
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1084.3 756 73.5
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1083.9 759 73.3
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 759 72.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1080.1 752 73.4
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1079.7 757 73.3
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1078.9 782 71.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.2e-312 1074.3 754 72.1
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.6e-311 1071.2 747 72.3
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 6.2e-311 1070.5 756 72.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 756 73.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 9.6e-309 1063.1 750 73.5
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 1.3e-308 1062.8 743 72.3
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 5.3e-307 1057.4 756 72.0
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.9e-305 1051.6 763 69.2
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.2e-303 1046.2 758 70.7
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 6.0e-303 1043.9 746 70.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 748 69.5
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 3.0e-302 1041.6 748 70.7
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.9e-301 1038.9 746 70.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.3e-301 1038.1 708 74.0
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.3e-301 1037.7 754 70.8
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.6e-300 1035.8 744 69.9
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 754 69.6
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 4.2e-296 1021.1 755 68.2
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.2e-296 1020.4 754 68.6
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.6e-295 1018.1 761 68.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.6e-295 1018.1 761 68.7
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.1e-293 1013.1 753 68.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-293 1012.3 761 68.3
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-292 1009.6 649 82.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.7e-292 1009.2 755 68.7
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-292 1008.8 761 68.2
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 2.2e-292 1008.8 761 68.2
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.2e-292 1008.8 759 68.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.8e-292 1007.7 760 67.8
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.8e-291 1005.7 756 68.3
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.8e-291 1005.7 756 68.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.6e-290 1001.9 778 66.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-289 998.8 755 67.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.2e-289 998.8 755 67.8
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 8.5e-289 996.9 753 68.3
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 8.5e-289 996.9 751 68.6
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.0e-286 989.9 756 66.4
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.8e-286 986.9 752 68.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.1e-285 986.5 754 67.2
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.0e-285 985.7 752 68.1
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.3e-284 983.0 755 66.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.7e-284 981.5 746 66.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.8e-283 979.2 774 67.4
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 1.8e-283 979.2 750 65.9
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 4.5e-282 974.5 746 67.7
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.3e-278 962.2 678 72.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.4e-275 953.0 752 66.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.4e-272 940.3 750 64.4
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.7e-271 938.7 751 65.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 4.7e-271 937.9 707 68.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.0e-262 908.3 756 62.8
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.7e-257 892.9 735 63.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-254 883.2 759 61.5
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.8e-254 882.9 656 66.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 4.4e-253 878.2 759 61.9
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 5.7e-253 877.9 750 62.7
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 5.7e-253 877.9 750 62.7
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.9e-252 874.8 817 58.8
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 9.2e-251 870.5 749 61.0
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.1e-248 863.6 754 59.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.0e-246 857.1 761 58.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 6.8e-246 854.4 730 62.2
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.4e-227 793.5 528 75.8
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 3.6e-223 778.9 757 54.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 5.8e-221 771.5 730 58.1
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.1e-219 764.6 533 72.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.7e-217 757.7 528 72.7
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.8e-213 745.0 750 54.3
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 8.4e-212 741.1 536 69.4
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 4.2e-203 712.2 753 50.9
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.9e-202 708.0 757 51.4
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 8.7e-201 704.5 752 51.3
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 5.6e-200 701.8 532 68.4
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.3e-183 647.5 742 48.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.7e-175 620.5 752 48.5
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.1e-166 591.3 387 79.3
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-153 546.6 474 66.7
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 5.2e-153 545.8 606 49.0
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.0e-132 478.4 388 63.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.4e-129 468.0 345 68.1
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.0e-108 398.7 730 34.9
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 5.8e-88 329.7 761 29.6
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.9e-83 314.7 837 29.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.6e-83 312.4 227 69.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.1e-77 294.7 222 70.7
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.1e-75 288.9 519 40.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 4.7e-53 213.8 124 87.9
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.1e-53 213.4 222 55.0
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 5.1e-52 210.3 202 59.9
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.5e-46 191.4 136 75.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.1e-43 182.6 102 91.2
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.1e-37 161.8 194 49.5
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.5e-31 140.2 91 74.7
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.5e-31 140.2 113 65.5
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.3e-26 125.9 92 73.9
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 6.3e-26 123.6 218 40.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.1e-25 122.9 115 56.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.8e-25 122.1 238 39.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 4.1e-25 120.9 235 37.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.2e-25 119.8 80 72.5
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 9.5e-22 109.8 79 74.7
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 2.6e-19 101.7 101 57.4
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.8e-19 99.8 74 67.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 9.8e-19 99.8 67 77.6
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.5e-16 91.3 116 40.5
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.3e-15 88.6 98 45.9
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 3.9e-15 87.8 55 80.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 6.6e-15 87.0 56 82.1
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 6.2e-13 80.5 111 39.6
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 8.9e-12 76.6 65 60.0
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 8.9e-12 76.6 65 60.0
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 5.8e-11 73.9 65 58.5
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.9e-10 71.6 63 60.3
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-09 69.3 64 54.7
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 1.1e-06 59.7 57 59.6
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 3.3e-06 58.2 63 54.0


User provided reference genes

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