Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 2.2e-99 365.5 175 100.0
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 1.9e-98 362.5 175 99.4
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.0e-96 356.7 175 95.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.0e-96 356.7 175 97.1
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 2.3e-96 355.5 175 97.1
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.5e-95 352.8 175 96.6
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.5e-95 352.1 175 96.6
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 5.7e-95 350.9 172 95.3
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 3.7e-94 348.2 175 93.7
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.4e-93 346.3 175 93.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 3.1e-93 345.1 175 92.6
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.1e-93 345.1 175 92.6
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 4.0e-93 344.7 175 93.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 4.0e-93 344.7 175 93.1
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 5.3e-93 344.4 174 93.1
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 6.9e-93 344.0 172 94.2
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 6.9e-93 344.0 174 93.1
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.5e-92 342.8 175 92.6
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.6e-92 342.0 175 92.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.4e-92 341.7 175 92.6
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 3.4e-92 341.7 173 93.6
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.4e-92 341.7 175 92.6
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 5.8e-92 340.9 174 92.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 7.6e-92 340.5 172 93.6
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.0e-91 340.1 175 92.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.0e-91 340.1 175 92.0
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 93.1
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 92.0
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.3e-91 339.7 174 90.8
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.7e-91 339.3 175 91.4
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.7e-91 339.3 172 93.6
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.9e-91 338.6 172 93.0
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 90.3
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 91.4
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 5.0e-91 337.8 174 92.5
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.4e-90 336.3 172 93.0
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 2.5e-90 335.5 174 89.7
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.2e-90 335.1 175 89.7
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 9.3e-90 333.6 174 90.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.3e-90 333.6 174 90.8
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 2.7e-89 332.0 173 90.8
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 3.5e-89 331.6 173 89.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.1e-89 330.9 174 90.2
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 7.9e-89 330.5 175 90.3
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.0e-88 330.1 174 89.1
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.0e-88 330.1 172 91.9
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.3e-88 329.7 173 87.9
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.3e-88 329.7 175 89.7
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.8e-88 329.3 172 89.5
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.0e-88 328.6 173 87.3
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 5.1e-88 327.8 172 87.8
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.1e-88 327.8 175 88.0
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 5.1e-88 327.8 174 89.1
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 6.7e-88 327.4 172 87.8
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 8.7e-88 327.0 173 86.7
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 8.7e-88 327.0 175 89.1
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 86.9
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 88.4
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.9e-87 325.9 174 90.8
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.9e-87 325.9 172 89.0
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 1.9e-87 325.9 171 90.1
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.9e-87 325.9 172 89.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.5e-87 325.5 173 86.7
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 86.7
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 3.3e-87 325.1 173 86.7
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.3e-87 325.1 171 87.1
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.3e-87 324.7 172 87.2
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 7.4e-87 323.9 175 86.3
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 86.6
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 9.7e-87 323.6 175 85.7
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.3e-86 323.2 172 86.6
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.3e-86 323.2 172 86.6
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.3e-86 323.2 174 86.8
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 86.7
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 89.0
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.8e-86 322.0 175 86.9
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 87.4
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.8e-86 322.0 172 87.8
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 87.2
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 86.0
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 86.9
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.4e-85 319.7 172 86.6
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 226 72.1
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 85.7
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 88.0
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.6e-84 315.5 190 80.5
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 5.9e-84 314.3 181 84.5
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 6.5e-83 310.8 173 83.2
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 83.7
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 83.7
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 83.7
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 83.7
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 7.2e-82 307.4 173 81.5
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.6e-81 306.2 173 80.9
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.1e-81 305.8 172 82.6
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.7e-81 305.4 159 90.6
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.6e-81 304.7 158 92.4
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.3e-80 302.4 175 80.6
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.5e-79 298.9 165 83.6
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.5e-71 273.1 151 86.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.6e-71 272.3 149 87.9
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 4.4e-71 271.6 138 94.9
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 7.4e-71 270.8 146 87.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 2.2e-70 269.2 174 70.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 6.3e-70 267.7 176 71.6
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.1e-69 266.9 174 67.8
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.8e-69 266.2 182 75.3
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.9e-67 258.8 174 66.7
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 6.5e-67 257.7 127 95.3
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.9e-66 256.1 147 84.4
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 3.6e-65 251.9 126 94.4
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 2.0e-63 246.1 130 90.0
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.8e-62 242.3 172 70.9
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 2.8e-62 242.3 128 89.1
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.1e-61 238.4 176 65.9
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.1e-61 238.4 133 85.7
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 7.0e-61 237.7 134 85.8
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.6e-60 235.7 130 86.2
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.6e-60 235.7 130 86.2
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 4.5e-60 235.0 127 85.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 3.8e-59 231.9 127 83.5
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.1e-58 230.3 147 81.0
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.9e-58 229.6 129 83.7
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-57 225.3 163 71.2
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 2.1e-49 199.5 132 72.7
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 8.0e-49 197.6 128 75.8
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.4e-48 196.8 131 77.1
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.1e-45 185.3 130 68.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.6e-42 174.9 92 92.4
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.0e-40 170.6 96 87.5
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.0e-40 168.7 91 91.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-38 162.9 92 88.0
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.9e-38 161.8 95 86.3
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-38 161.0 104 77.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.3e-38 161.0 90 90.0
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.4e-37 158.3 95 82.1
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.7e-35 153.3 80 87.5
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.7e-35 153.3 88 83.0
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.9e-34 149.8 93 75.3
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.3e-32 142.9 75 92.0
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-29 133.3 77 85.7
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 9.2e-29 131.0 99 63.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.0e-28 129.8 80 77.5
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 7.8e-28 127.9 192 35.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 4.7e-25 118.6 67 74.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.9e-21 106.7 89 60.7
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 3.0e-19 99.4 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 6.0e-12 75.1 37 78.4


User provided reference genes

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