Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 1.0e-72 276.6 134 100.0
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 1.1e-63 246.5 133 91.7
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 1.8e-56 222.6 128 85.2
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 5.7e-55 217.6 123 87.0
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 8.0e-41 170.6 135 69.6
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.3e-38 163.3 130 69.2
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 2.9e-35 152.1 142 62.0
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 3.9e-35 151.8 138 63.0
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.5e-34 149.8 129 66.7
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 7.3e-34 147.5 132 62.9
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.8e-33 145.6 126 63.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.6e-20 101.7 129 45.7
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.9e-19 98.6 121 48.8
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.5e-18 95.9 130 44.6
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.3e-18 95.5 114 49.1
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.3e-18 95.5 132 46.2
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 7.3e-18 94.4 152 43.4
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.2e-17 91.3 141 41.1
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.2e-17 91.3 141 41.1
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.1e-17 90.9 141 39.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 8.1e-17 90.9 141 39.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.4e-16 90.1 114 48.2
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 3.1e-16 89.0 129 41.1
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 5.2e-16 88.2 128 39.8
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 6.8e-16 87.8 126 40.5
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.9e-16 87.4 129 41.9
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.0e-15 86.3 153 39.9
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.0e-15 86.3 149 36.9
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 2.0e-15 86.3 150 40.7
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.4e-15 85.5 128 39.1
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 3.4e-15 85.5 143 42.0
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 4.4e-15 85.1 140 42.9
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.3e-14 83.6 141 41.8
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-14 83.6 149 41.6
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.7e-14 82.0 142 38.0
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 3.7e-14 82.0 136 40.4
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 8.4e-14 80.9 132 42.4
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.1e-13 80.5 86 57.0
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 1.1e-13 80.5 141 44.0
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.9e-13 79.7 133 39.8
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.9e-13 79.7 146 39.7
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.4e-13 79.3 132 43.9
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.2e-13 79.0 129 42.6
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 9.2e-13 77.4 130 41.5
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 9.2e-13 77.4 135 39.3
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 9.2e-13 77.4 160 36.2
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.2e-12 77.0 137 38.7
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.2e-12 77.0 124 42.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.6e-12 76.6 130 37.7
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.7e-12 75.9 122 40.2
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 2.7e-12 75.9 149 39.6
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.7e-12 75.9 118 41.5
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 3.5e-12 75.5 110 41.8
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 3.5e-12 75.5 120 39.2
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 3.5e-12 75.5 144 35.4
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.6e-12 75.1 119 42.9
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.6e-12 75.1 117 40.2
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 7.8e-12 74.3 113 40.7
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 7.8e-12 74.3 125 40.8
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.0e-11 73.9 119 40.3
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 1.3e-11 73.6 143 35.7
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 1.3e-11 73.6 166 35.5
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 1.7e-11 73.2 126 41.3
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.7e-11 73.2 94 51.1
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.7e-11 73.2 148 39.9
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 1.7e-11 73.2 110 42.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.7e-11 73.2 117 39.3
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.7e-11 73.2 129 38.0
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.3e-11 72.8 110 41.8
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.3e-11 72.8 125 36.8
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 3.9e-11 72.0 123 36.6
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.1e-11 71.6 136 40.4
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.1e-11 71.6 136 40.4
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.1e-11 71.6 153 36.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 8.6e-11 70.9 113 39.8
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 1.1e-10 70.5 147 36.1
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-10 70.5 135 37.8
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 136 39.7
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 70 51.4
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.9e-10 69.7 126 40.5
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.9e-10 69.7 126 40.5
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 2.5e-10 69.3 122 41.0
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.5e-10 69.3 86 45.3
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.5e-10 69.3 79 49.4
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 3.3e-10 68.9 122 38.5
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 4.3e-10 68.6 133 37.6
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 4.3e-10 68.6 122 37.7
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 5.6e-10 68.2 109 38.5
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 5.6e-10 68.2 136 35.3
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 5.6e-10 68.2 110 42.7
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.6e-10 68.2 163 37.4
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 7.3e-10 67.8 132 37.1
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 7.3e-10 67.8 163 34.4
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 9.6e-10 67.4 67 56.7
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 9.6e-10 67.4 124 37.9
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 9.6e-10 67.4 124 39.5
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.6e-09 66.6 126 37.3
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 2.8e-09 65.9 136 37.5
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.8e-09 65.9 163 36.8
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.6e-09 65.5 71 52.1
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 3.6e-09 65.5 129 39.5
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.6e-09 65.5 66 51.5
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 4.7e-09 65.1 140 35.7
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.7e-09 65.1 88 44.3
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.7e-09 65.1 128 37.5
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 6.2e-09 64.7 113 39.8
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.2e-09 64.7 113 35.4
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 8.1e-09 64.3 153 32.7
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 8.1e-09 64.3 156 32.7
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 1.1e-08 63.9 105 41.9
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.4e-08 63.5 113 34.5
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-08 63.2 96 40.6
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.8e-08 63.2 135 42.2
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 2.4e-08 62.8 65 50.8
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 3.1e-08 62.4 130 35.4
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.1e-08 62.4 120 34.2
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 4.0e-08 62.0 66 50.0
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 4.0e-08 62.0 110 40.9
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 5.2e-08 61.6 77 45.5
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 5.2e-08 61.6 77 45.5
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.2e-08 61.6 126 35.7
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 6.8e-08 61.2 77 45.5
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 6.8e-08 61.2 77 45.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 6.8e-08 61.2 124 37.1
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 6.8e-08 61.2 159 32.7
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.8e-08 61.2 63 47.6
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 8.9e-08 60.8 131 38.2
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 8.9e-08 60.8 131 38.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 1.2e-07 60.5 129 35.7
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 1.2e-07 60.5 119 35.3
Rhsim01G0052600 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.2e-07 60.5 98 42.9
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 1.5e-07 60.1 150 34.7
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 1.5e-07 60.1 59 50.8
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.5e-07 60.1 125 34.4
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.0e-07 59.7 71 46.5
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 2.0e-07 59.7 103 40.8
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.0e-07 59.7 63 50.8
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 2.0e-07 59.7 118 38.1
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.0e-07 59.7 147 37.4
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 2.0e-07 59.7 157 33.1
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.6e-07 59.3 73 45.2
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.6e-07 59.3 71 46.5
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.6e-07 59.3 82 46.3
Eucgr.C00437 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.4e-07 58.5 86 39.5
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 5.8e-07 58.2 128 32.8
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 9.9e-07 57.4 113 38.9
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.3e-06 57.0 75 45.3
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.2e-06 56.2 146 34.2
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 2.2e-06 56.2 107 39.3
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.9e-06 55.8 121 35.5
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 3.8e-06 55.5 132 34.8
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 4.9e-06 55.1 164 29.9
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 4.9e-06 55.1 114 39.5
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 6.4e-06 54.7 86 39.5
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.4e-06 54.3 90 40.0
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 8.4e-06 54.3 131 35.1


User provided reference genes

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