Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 6.8e-72 273.9 135 100.0
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 3.1e-48 195.3 185 58.9
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.7e-46 189.5 168 61.9
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 1.1e-42 176.8 168 57.1
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 4.3e-42 174.9 168 58.3
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 7.3e-42 174.1 168 57.7
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.5e-39 166.4 168 51.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.0e-39 166.0 168 52.4
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 3.4e-39 165.2 168 51.2
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 2.4e-37 159.1 168 50.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.1e-36 156.0 168 50.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 2.1e-36 156.0 170 50.6
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 3.5e-36 155.2 168 50.6
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 2.5e-34 149.1 170 49.4
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.7e-30 136.3 168 43.5
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 2.2e-30 136.0 166 43.4
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.2e-30 136.0 166 43.4
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.2e-30 136.0 166 43.4
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 4.9e-30 134.8 169 42.6
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 8.4e-30 134.0 168 41.1
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.1e-29 133.7 166 42.8
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.4e-29 133.3 185 40.0
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.9e-29 132.9 166 42.2
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 9.3e-29 130.6 168 39.9
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.1e-28 129.4 166 42.2
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 2.7e-28 129.0 168 42.3
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 7.8e-28 127.5 168 41.7
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.3e-27 126.7 175 40.6
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.3e-27 126.7 167 40.7
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.9e-27 125.2 168 39.9
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.1e-27 124.8 168 41.1
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 5.1e-27 124.8 163 46.0
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-26 123.6 185 38.9
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.9e-26 122.9 168 41.1
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.5e-26 122.5 168 40.5
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.5e-26 122.5 168 37.5
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 3.3e-26 122.1 168 39.3
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.6e-26 121.3 168 38.1
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 5.6e-26 121.3 158 46.8
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 7.3e-26 120.9 167 40.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.6e-25 119.8 169 40.2
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 2.1e-25 119.4 186 36.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 2.8e-25 119.0 168 39.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 2.8e-25 119.0 169 37.9
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 4.8e-25 118.2 167 40.1
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 6.2e-25 117.9 168 37.5
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 6.2e-25 117.9 168 39.9
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.1e-24 117.1 161 37.9
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.1e-24 117.1 175 38.3
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.4e-24 116.7 168 36.3
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.8e-24 116.3 168 39.3
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.4e-24 115.9 185 35.1
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 3.1e-24 115.5 169 37.9
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.0e-24 115.2 175 37.1
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 4.0e-24 115.2 185 36.2
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 9.0e-24 114.0 124 57.3
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 1.5e-23 113.2 185 34.6
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.0e-23 112.8 168 37.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 3.4e-23 112.1 168 37.5
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 5.8e-23 111.3 168 36.3
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 7.6e-23 110.9 163 39.3
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 9.9e-23 110.5 168 37.5
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 9.9e-23 110.5 185 36.2
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.7e-22 109.8 168 37.5
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.7e-22 109.8 172 38.4
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.9e-22 109.0 168 36.3
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.9e-22 109.0 185 34.6
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 3.8e-22 108.6 168 35.7
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.8e-22 108.6 167 37.1
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 3.8e-22 108.6 168 36.9
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 3.8e-22 108.6 175 37.7
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 4.9e-22 108.2 191 35.1
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 6.4e-22 107.8 168 35.1
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 8.4e-22 107.5 168 37.5
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 8.4e-22 107.5 164 37.8
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 1.1e-21 107.1 184 34.2
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 1.1e-21 107.1 184 34.2
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.1e-21 107.1 168 36.9
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.1e-21 107.1 165 40.0
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.1e-21 107.1 168 35.1
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.4e-21 106.7 167 37.7
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.9e-21 106.3 169 36.7
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.9e-21 106.3 169 36.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 2.4e-21 105.9 168 37.5
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 3.2e-21 105.5 169 36.1
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 3.2e-21 105.5 169 36.1
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.2e-21 105.5 167 34.7
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.2e-21 105.5 175 38.3
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 5.4e-21 104.8 160 37.5
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 5.4e-21 104.8 194 34.0
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.1e-21 104.4 185 33.5
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 9.3e-21 104.0 169 37.9
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 9.3e-21 104.0 184 33.7
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-20 103.6 169 36.1
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.2e-20 103.6 168 35.1
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.6e-20 103.2 171 35.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 2.1e-20 102.8 161 34.8
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.0e-20 101.3 168 33.9
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 6.0e-20 101.3 168 36.3
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.0e-19 100.5 124 41.1
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.3e-19 100.1 163 38.7
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 1.3e-19 100.1 163 38.7
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.3e-19 100.1 163 38.7
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.3e-19 100.1 168 35.1
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.3e-19 99.4 163 35.6
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 3.9e-19 98.6 168 33.9
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 6.7e-19 97.8 186 33.9
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 2.1e-17 92.8 174 33.3
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 2.1e-17 92.8 176 33.0
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 2.8e-17 92.4 168 33.3
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 6.2e-17 91.3 189 31.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 8.1e-17 90.9 167 32.3
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.1e-16 90.5 169 32.5
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.8e-16 89.7 151 35.8
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 9.0e-16 87.4 173 34.1
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.2e-15 87.0 169 32.0
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.5e-15 86.7 174 35.1
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.0e-15 86.3 176 34.1
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.6e-15 85.9 167 34.7
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 7.6e-15 84.3 172 30.2
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.8e-14 82.0 168 31.5
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.8e-14 82.0 154 33.1
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.4e-14 81.3 98 45.9
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.4e-14 81.3 156 35.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 2.4e-13 79.3 167 31.1
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.1e-12 76.3 148 31.8
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.8e-11 73.2 108 41.7
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.3e-11 72.8 136 33.8
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.9e-11 72.0 184 29.3
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 3.9e-11 72.0 123 35.8
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 5.1e-11 71.6 168 30.4
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.1e-10 70.5 154 31.2
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.1e-10 70.5 165 29.1
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.3e-10 68.9 101 43.6
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.3e-10 68.9 97 40.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 4.3e-10 68.6 73 46.6
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 9.6e-10 67.4 66 53.0
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.8e-09 65.9 69 47.8
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 4.8e-09 65.1 111 39.6
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.2e-09 64.3 205 25.4
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-08 62.8 137 29.2
Medtr5g067190 Medicago truncatula HOM05D004232 ORTHO05D004909 5.8e-07 58.2 34 70.6
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 1.3e-06 57.0 57 42.1
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.5e-06 54.7 130 30.8
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 8.4e-06 54.3 96 34.4


User provided reference genes

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