Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 0.0e+00 1237.2 634 100.0
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.4e-292 1009.2 648 84.4
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.3e-277 959.5 701 75.6
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 8.2e-277 956.8 709 76.4
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 5.9e-227 791.2 730 64.7
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 7.2e-225 784.3 675 67.1
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 5.0e-218 761.5 692 65.2
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 3.1e-215 752.3 639 69.0
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 3.9e-210 735.3 818 57.2
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 1.5e-209 733.4 706 62.3
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 5.1e-202 708.4 491 76.2
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.6e-171 607.1 775 50.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 1.6e-168 597.0 454 68.9
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 1.2e-166 590.9 729 51.4
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 4.9e-165 585.5 762 48.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 2.5e-164 583.2 878 45.1
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 5.5e-164 582.0 812 47.5
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 7.1e-164 581.6 451 66.7
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 3.5e-163 579.3 803 47.6
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 3.5e-163 579.3 659 55.2
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 1.3e-162 577.4 752 49.5
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.5e-161 573.2 782 48.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.3e-160 570.9 457 65.4
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 2.8e-160 569.7 724 51.5
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.8e-159 567.0 743 48.9
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 2.0e-158 563.5 641 52.4
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 4.5e-158 562.4 459 65.6
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 7.6e-158 561.6 776 46.9
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 1.7e-157 560.5 640 54.7
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 3.8e-157 559.3 771 47.3
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.5e-156 556.6 461 64.0
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 6.1e-155 552.0 464 62.7
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.3e-154 550.8 877 42.8
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.8e-154 550.4 435 65.1
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.3e-153 546.2 653 52.4
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 9.7e-153 544.7 502 61.2
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 3.7e-152 542.7 420 66.4
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 3.7e-152 542.7 668 49.7
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 6.3e-152 542.0 503 59.4
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.4e-151 540.8 471 63.1
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.8e-151 540.4 735 48.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.5e-150 537.3 740 48.5
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.5e-150 537.3 665 51.4
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.9e-149 533.1 537 56.8
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 8.5e-149 531.6 725 48.6
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 1.1e-148 531.2 874 42.8
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.1e-147 525.4 784 45.9
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 6.7e-146 521.9 666 50.6
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.1e-145 521.2 462 61.9
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 4.3e-145 519.2 876 42.8
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 7.4e-145 518.5 451 61.6
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 9.7e-145 518.1 578 52.9
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.8e-144 516.5 508 59.1
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 4.8e-144 515.8 605 53.6
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 1.1e-143 514.6 431 62.6
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 5.3e-143 512.3 658 50.5
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.5e-142 510.8 814 44.8
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 5.0e-141 505.8 755 45.0
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 6.5e-141 505.4 914 40.9
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 8.5e-141 505.0 730 45.9
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.1e-140 504.6 415 63.4
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.9e-140 503.8 457 60.6
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 2.5e-140 503.4 693 48.1
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 3.2e-140 503.1 694 48.3
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.2e-139 501.1 461 59.7
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.0e-138 498.0 816 44.2
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.8e-138 497.3 696 48.0
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 5.1e-138 495.7 751 44.5
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.5e-137 494.2 417 62.1
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.7e-136 490.7 707 46.1
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 2.4e-135 486.9 979 38.0
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 4.1e-135 486.1 685 47.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 7.0e-135 485.3 698 46.4
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.9e-134 482.3 735 45.6
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 1.7e-133 480.7 386 65.5
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 2.9e-133 479.9 707 47.2
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 8.5e-133 478.4 692 47.0
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 2.7e-131 473.4 413 61.3
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 4.7e-131 472.6 755 43.0
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 6.1e-131 472.2 511 54.2
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 6.7e-130 468.8 867 39.8
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 8.8e-130 468.4 694 45.7
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 1.5e-129 467.6 701 45.8
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.6e-126 457.6 684 46.5
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 2.0e-126 457.2 629 48.3
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 1.3e-125 454.5 685 46.4
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 2.9e-125 453.4 511 53.6
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 8.5e-125 451.8 514 54.7
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 3.2e-124 449.9 425 56.2
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.0e-122 444.9 624 46.6
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 4.4e-121 439.5 534 54.9
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 9.8e-121 438.3 712 44.7
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 7.0e-119 432.2 648 44.9
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 7.0e-119 432.2 742 42.0
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 7.0e-119 432.2 428 55.8
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 2.9e-117 426.8 765 40.5
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.8e-114 417.5 849 38.4
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 7.7e-110 402.1 431 54.1
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 3.3e-108 396.7 695 42.7
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 2.0e-97 360.9 358 57.8
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.4e-95 352.8 278 63.7
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.5e-92 344.7 778 36.9
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 1.2e-83 315.1 472 44.1
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 4.9e-72 276.6 255 63.1
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 7.1e-71 272.7 284 54.9
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.4e-47 195.3 111 85.6
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 1.7e-40 171.8 154 60.4
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.0e-37 162.5 212 41.5
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 9.7e-36 156.0 174 50.6
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.2e-33 149.1 108 69.4
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 4.7e-22 110.5 81 69.1
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 6.7e-21 106.7 89 66.3
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 2.4e-18 98.2 83 63.9
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.0e-13 82.8 132 44.7
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 2.0e-12 78.6 73 53.4


User provided reference genes

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