Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 1.1e-130 469.9 235 100.0
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 2.3e-107 392.5 247 81.8
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.2e-105 386.7 247 80.2
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 2.1e-84 316.2 249 68.7
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 3.3e-82 308.9 203 75.4
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 6.2e-81 304.7 203 73.9
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 2.5e-77 292.7 246 64.2
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 1.2e-76 290.4 237 67.5
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 2.3e-75 286.2 186 76.3
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 5.1e-75 285.0 221 63.8
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 4.3e-74 282.0 209 68.4
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 5.7e-74 281.6 185 74.1
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 2.8e-73 279.3 217 64.1
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 2.8e-73 279.3 210 66.2
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.7e-73 278.9 225 62.2
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 6.3e-73 278.1 210 66.2
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 6.3e-73 278.1 185 73.0
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 1.1e-72 277.3 232 65.9
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.4e-72 276.9 239 61.5
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.4e-72 276.9 187 72.2
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 4.1e-72 275.4 212 63.7
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 4.1e-72 275.4 186 72.0
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 6.9e-72 274.6 192 69.3
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 1.2e-71 273.9 241 59.8
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 1.2e-71 273.9 208 67.3
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.5e-71 273.5 235 60.0
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 4.5e-71 271.9 189 71.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 2.9e-70 269.2 187 70.1
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.8e-70 268.9 215 63.3
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 8.4e-70 267.7 206 62.6
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 1.1e-69 267.3 201 67.2
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 1.9e-69 266.5 190 68.9
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.3e-69 264.2 228 61.8
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 9.3e-69 264.2 183 68.3
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 2.7e-68 262.7 195 64.1
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 4.6e-68 261.9 233 56.7
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 4.6e-68 261.9 207 59.4
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 6.1e-68 261.5 206 62.1
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 1.0e-67 260.8 214 62.6
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 1.3e-67 260.4 218 60.6
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 5.1e-67 258.5 205 60.5
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 5.1e-67 258.5 206 63.1
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 5.1e-67 258.5 189 67.2
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 5.1e-67 258.5 200 65.0
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 6.7e-67 258.1 209 61.2
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 8.7e-67 257.7 217 61.3
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 1.5e-66 256.9 193 65.3
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.5e-66 256.9 177 68.4
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 5.7e-66 255.0 188 63.3
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 7.4e-66 254.6 202 58.9
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 7.4e-66 254.6 188 64.4
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 7.4e-66 254.6 186 67.7
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 7.4e-66 254.6 199 62.3
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 9.7e-66 254.2 188 63.8
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 9.7e-66 254.2 172 69.8
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 9.7e-66 254.2 230 59.1
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 1.3e-65 253.8 182 68.1
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.2e-65 253.1 188 66.0
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 2.2e-65 253.1 209 60.3
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 2.2e-65 253.1 195 64.6
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 2.2e-65 253.1 206 61.7
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 2.8e-65 252.7 213 59.6
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.8e-65 252.7 179 67.0
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 3.7e-65 252.3 187 63.1
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 4.8e-65 251.9 178 66.9
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 4.8e-65 251.9 189 65.6
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 4.8e-65 251.9 172 69.2
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 6.3e-65 251.5 233 55.8
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 6.3e-65 251.5 188 65.4
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 6.3e-65 251.5 182 67.6
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 1.1e-64 250.8 188 64.4
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 1.1e-64 250.8 188 64.4
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.8e-64 250.0 181 65.2
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.8e-64 250.0 177 67.2
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 1.8e-64 250.0 212 59.4
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 2.4e-64 249.6 222 59.9
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 2.4e-64 249.6 188 64.9
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 2.4e-64 249.6 233 55.4
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 2.4e-64 249.6 188 62.8
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 5.3e-64 248.4 188 62.8
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 5.3e-64 248.4 188 62.8
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 6.9e-64 248.1 213 58.2
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 6.9e-64 248.1 178 65.7
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 2.0e-63 246.5 209 58.9
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 1.0e-62 244.2 172 65.7
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 1.3e-62 243.8 176 65.9
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 1.7e-62 243.4 183 65.0
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 2.2e-62 243.0 235 53.6
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 5.0e-62 241.9 167 68.3
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 8.5e-62 241.1 182 64.8
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 1.9e-61 240.0 195 61.5
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 1.9e-61 240.0 172 64.5
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 3.2e-61 239.2 175 65.1
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 4.2e-61 238.8 178 64.6
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.6e-60 236.9 163 68.1
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 2.1e-60 236.5 178 63.5
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 1.0e-59 234.2 176 63.1
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.4e-59 233.8 174 64.4
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 1.4e-59 233.8 159 67.9
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 3.9e-59 232.3 176 63.1
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.1e-58 230.7 199 60.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 5.7e-58 228.4 186 57.5
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 7.4e-58 228.0 195 57.9
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 7.4e-58 228.0 208 55.8
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 1.1e-56 224.2 167 60.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 1.7e-54 216.9 197 57.4
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 2.9e-54 216.1 144 72.9
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.8e-51 206.8 154 64.3
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 5.7e-50 201.8 209 50.7
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 5.3e-48 195.3 131 73.3
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 7.7e-47 191.4 151 64.2
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 1.0e-46 191.0 155 56.1
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 5.0e-46 188.7 135 66.7
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.1e-45 187.6 141 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 7.2e-45 184.9 228 46.1
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 1.2e-44 184.1 128 71.1
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 6.7e-43 178.3 136 63.2
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.0e-42 176.8 128 66.4
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-41 173.3 159 56.0
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-41 173.3 159 54.7
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 2.2e-41 173.3 159 54.7
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 6.8e-35 151.8 95 72.6
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 8.3e-33 144.8 145 54.5
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.8e-32 143.7 104 64.4
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 8.5e-30 134.8 82 75.6
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 3.0e-27 126.3 119 58.0
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 7.5e-26 121.7 117 56.4
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 2.1e-20 103.6 91 59.3
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 3.4e-18 96.3 50 96.0
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 3.7e-17 92.8 157 38.9
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 3.9e-14 82.8 152 30.9
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 5.2e-11 72.4 49 69.4
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 1.7e-09 67.4 129 28.7
Cfa005086 Carpinus fangiana HOM05D005796 ORTHO05D007054 6.0e-07 58.9 79 44.3
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 7.8e-07 58.5 37 64.9


User provided reference genes

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