Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 3.2e-260 901.4 497 100.0
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 3.7e-232 808.1 503 88.7
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 5.5e-212 741.1 499 84.4
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.9e-206 721.1 507 82.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 2.3e-189 666.0 517 72.9
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.2e-184 649.4 520 70.6
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.4e-177 625.2 524 70.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 8.1e-171 604.4 525 68.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.7e-168 596.7 496 69.2
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 7.6e-161 571.2 541 63.6
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.2e-158 563.9 530 63.2
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 4.3e-156 555.4 496 67.3
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.4e-146 523.9 530 58.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 9.0e-146 521.2 532 59.8
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-141 506.1 525 56.4
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.8e-139 498.8 530 56.8
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.8e-138 496.9 525 57.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.2e-136 490.0 529 56.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 1.0e-133 481.1 540 55.9
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.5e-132 477.2 526 55.7
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 4.3e-132 475.7 529 56.0
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 5.6e-132 475.3 519 57.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.6e-131 473.8 528 55.1
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.1e-130 471.1 536 56.0
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 9.0e-130 468.0 530 55.8
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.6e-129 466.5 533 56.1
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.6e-129 466.5 337 74.5
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.6e-129 466.5 527 53.9
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.8e-129 465.3 486 58.0
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 5.8e-129 465.3 530 55.7
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-128 464.5 554 52.9
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.3e-128 464.2 529 54.3
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.5e-128 461.8 506 55.5
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.2e-126 457.6 508 55.3
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-126 457.2 507 55.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 2.7e-126 456.4 507 55.2
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.0e-126 455.3 506 55.3
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-125 453.8 507 54.2
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 2.3e-125 453.4 531 53.7
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 5.1e-125 452.2 510 54.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.7e-125 451.8 527 53.7
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.7e-123 446.0 531 54.4
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.7e-123 446.0 531 55.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 8.2e-123 444.9 510 54.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.2e-121 441.0 538 54.1
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 7.6e-121 438.3 616 47.7
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 7.6e-121 438.3 540 52.6
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.3e-120 437.6 514 54.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.0e-120 435.6 492 55.5
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.4e-119 434.1 532 52.6
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-119 434.1 528 54.0
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.2e-119 433.0 533 52.5
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 7.2e-119 431.8 535 52.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.9e-118 428.3 501 54.3
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.8e-117 427.2 484 54.3
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 2.5e-116 423.3 533 50.5
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 7.4e-116 421.8 522 52.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.6e-115 420.6 518 51.4
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.8e-115 419.9 522 52.5
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 2.8e-115 419.9 547 51.4
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 3.7e-115 419.5 522 52.9
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.8e-115 419.1 522 52.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.0e-112 411.4 518 51.4
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.3e-112 411.0 552 48.4
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 5.0e-112 409.1 532 50.6
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 8.5e-112 408.3 520 53.8
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 1.9e-111 407.1 515 49.9
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 3.2e-111 406.4 513 50.9
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.2e-110 404.4 507 51.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.6e-110 404.1 529 50.7
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.6e-110 404.1 492 53.5
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.0e-109 401.4 520 51.2
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.5e-108 397.5 530 51.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.5e-105 387.5 532 50.8
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.5e-105 387.5 521 48.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 3.4e-105 386.3 490 49.0
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 8.5e-104 381.7 477 48.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.9e-103 380.6 482 49.6
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.2e-102 377.9 506 51.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 4.7e-102 375.9 508 49.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.0e-101 374.8 530 49.2
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.4e-100 368.6 488 48.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.4e-98 364.4 543 46.2
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 1.6e-97 360.9 528 46.0
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.0e-97 360.5 498 45.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.9e-96 356.7 524 48.9
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.2e-95 353.2 536 47.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 3.6e-94 349.7 528 47.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 8.0e-94 348.6 505 49.5
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.0e-93 346.3 511 46.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 8.8e-93 345.1 531 46.9
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 3.3e-92 343.2 525 44.0
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 4.4e-92 342.8 551 43.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 7.5e-92 342.0 518 45.4
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.7e-91 340.9 542 46.5
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 4.8e-91 339.3 413 55.9
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.4e-90 337.0 531 44.1
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.9e-89 332.4 434 50.5
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.7e-88 330.9 523 44.0
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 3.8e-88 329.7 318 62.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.9e-87 327.4 528 43.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 3.2e-87 326.6 492 44.7
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 5.5e-87 325.9 522 43.5
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.7e-86 323.6 491 44.0
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.6e-86 323.2 517 43.3
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 3.0e-85 320.1 487 45.0
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.0e-85 320.1 520 42.9
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 6.8e-85 318.9 520 42.7
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 6.8e-85 318.9 522 42.3
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.0e-84 317.4 522 42.0
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.3e-83 314.7 524 43.3
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.1e-82 311.6 519 42.4
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-82 311.2 518 42.3
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.4e-82 310.5 519 42.2
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.1e-82 310.1 482 42.5
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 4.1e-82 309.7 518 42.1
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 9.1e-82 308.5 349 56.4
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.6e-81 307.8 485 42.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.6e-81 307.8 513 41.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 7.7e-81 305.4 506 41.9
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.5e-79 301.2 417 47.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.8e-77 294.3 534 40.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-74 285.0 520 39.6
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.6e-73 281.2 481 43.7
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.0e-72 278.5 352 52.6
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.8e-72 276.6 415 47.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.8e-72 276.6 513 43.3
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 8.0e-70 268.9 482 39.4
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.8e-69 267.7 511 41.3
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.5e-68 264.6 555 40.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.8e-68 261.9 474 41.6
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 2.2e-67 260.8 323 55.7
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 3.2e-66 256.9 252 62.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 5.4e-66 256.1 241 60.6
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 4.7e-62 243.0 517 37.7
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 4.0e-61 240.0 335 48.4
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.6e-57 228.0 467 37.7
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 3.9e-56 223.4 468 36.8
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 4.7e-54 216.5 584 33.2
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 8.9e-53 212.2 428 36.9
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 5.8e-52 209.5 399 35.3
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.7e-49 200.7 478 35.4
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.6e-46 191.4 397 36.8
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.4e-44 183.3 279 42.3
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 7.6e-44 182.6 335 40.0
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.7e-43 181.4 380 36.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.2e-43 181.0 380 36.3
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.9e-43 179.9 529 31.0
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 8.6e-40 169.1 229 47.2
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.1e-38 164.5 399 33.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 5.2e-37 159.8 249 46.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-36 158.7 262 41.2
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.4e-36 157.1 463 32.4
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 4.2e-34 150.2 464 30.8
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 3.5e-33 147.1 560 30.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.9e-31 141.4 169 49.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.6e-30 137.1 178 47.2
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.8e-29 134.8 204 43.1
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 3.1e-29 134.0 191 46.6
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 7.1e-26 122.9 355 32.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.9e-24 117.1 226 36.3
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.3e-23 114.0 224 37.5
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 1.4e-21 108.6 152 40.8
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.0e-21 107.1 121 52.9
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.5e-20 105.1 108 54.6
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 2.0e-20 104.8 128 52.3
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 4.9e-19 100.1 142 40.1
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.2e-18 97.4 194 44.8
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.0e-16 92.4 110 46.4
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.3e-16 92.0 102 53.9
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.2e-12 79.0 70 60.0
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 1.6e-09 68.6 89 48.3
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.3e-08 65.5 51 60.8
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 3.0e-08 64.3 69 47.8
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.9e-08 63.9 75 49.3


User provided reference genes

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