Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.3e-143 513.1 265 100.0
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 2.5e-134 482.3 266 94.4
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.2e-118 428.7 262 86.3
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.6e-112 409.8 228 93.9
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 6.3e-106 387.9 264 76.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.1e-105 387.1 265 75.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.6e-104 383.3 233 83.3
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.7e-104 382.5 254 77.6
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.6e-99 365.9 241 75.5
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 4.4e-99 365.2 246 74.8
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.7e-98 363.2 211 81.5
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.7e-98 363.2 253 72.7
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 2.2e-98 362.8 250 72.8
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 6.3e-98 361.3 258 70.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.1e-97 360.5 246 73.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 4.1e-97 358.6 243 73.3
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.0e-96 356.3 275 71.3
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.5e-96 355.5 266 71.8
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 1.3e-95 353.6 215 80.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.6e-95 350.9 292 66.1
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 3.3e-94 349.0 238 73.5
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 5.5e-94 348.2 230 75.7
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 7.2e-94 347.8 213 79.8
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.2e-93 347.1 237 73.0
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.2e-93 347.1 262 70.2
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.1e-93 346.3 241 71.4
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.1e-93 344.7 246 71.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 8.0e-93 344.4 246 70.7
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.8e-92 343.2 249 71.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.8e-92 343.2 245 71.4
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 6.8e-92 341.3 213 79.3
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.2e-91 340.5 233 73.0
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.0e-91 339.7 242 70.7
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.0e-91 339.7 242 70.7
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.0e-91 339.7 242 70.7
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.3e-90 337.0 212 78.8
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.2e-90 336.3 240 69.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 8.3e-90 334.3 215 76.3
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.1e-89 334.0 218 72.5
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.4e-89 332.8 286 61.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.0e-89 331.3 196 80.1
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.2e-88 330.5 243 69.5
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 8.6e-87 324.3 214 73.4
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.5e-86 323.6 241 69.3
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.5e-86 323.6 244 67.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.5e-86 323.6 265 66.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.9e-86 323.2 241 69.3
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 3.3e-86 322.4 247 67.2
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 5.6e-86 321.6 278 64.0
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 5.6e-86 321.6 244 68.0
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 5.6e-86 321.6 253 66.0
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 9.5e-86 320.9 246 67.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 9.5e-86 320.9 247 67.6
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.2e-85 320.5 247 67.2
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.6e-85 320.1 235 71.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.6e-85 320.1 253 66.8
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.6e-85 320.1 230 70.4
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.1e-85 319.7 243 68.7
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.1e-85 319.7 243 68.7
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.6e-85 318.9 244 67.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.6e-85 318.9 228 69.7
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.7e-85 318.5 244 68.9
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 4.7e-85 318.5 230 70.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 1.0e-84 317.4 238 68.9
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.8e-84 316.6 244 68.4
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.8e-84 316.6 237 68.4
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.8e-84 316.6 243 68.3
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.3e-84 316.2 283 61.8
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 4.0e-84 315.5 245 68.2
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.2e-84 315.1 211 74.4
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 6.8e-84 314.7 251 65.7
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 8.9e-84 314.3 253 64.8
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 1.2e-83 313.9 243 65.4
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.0e-83 313.2 181 84.5
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 4.4e-83 312.0 262 63.4
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 2.9e-82 309.3 252 65.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.7e-82 308.9 261 63.2
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 6.4e-82 308.1 264 62.1
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 8.3e-82 307.8 263 63.5
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 8.3e-82 307.8 215 68.4
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.9e-81 306.6 236 68.2
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.4e-81 306.2 224 71.9
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 2.4e-81 306.2 215 67.9
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 7.0e-81 304.7 246 63.4
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.0e-79 300.8 243 66.3
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.0e-79 299.3 216 67.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.5e-78 297.0 238 64.3
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.5e-78 296.2 233 65.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.6e-77 293.5 211 66.8
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.2e-77 291.6 261 61.7
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 4.0e-76 288.9 241 62.7
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 5.2e-76 288.5 290 55.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 9.8e-75 284.3 243 62.1
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 9.8e-75 284.3 197 73.1
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.3e-74 283.9 219 64.4
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.4e-73 278.5 241 60.6
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 5.4e-73 278.5 204 67.2
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.5e-72 275.8 230 61.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 4.6e-72 275.4 214 63.1
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 3.9e-71 272.3 235 63.4
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.7e-69 265.4 149 80.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.3e-63 246.5 232 56.5
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.5e-62 243.8 177 73.4
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.1e-52 209.5 116 81.9
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.5e-51 207.2 134 76.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.6e-51 204.9 243 48.1
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 7.1e-49 198.4 203 58.1
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-47 194.1 192 56.8
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 8.4e-42 174.9 141 72.3
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.2e-40 171.0 139 71.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.5e-38 163.3 178 49.4
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.4e-33 147.5 152 57.9
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 5.7e-30 135.6 105 68.6
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.4e-30 135.2 179 45.3
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.3e-29 134.4 200 39.5
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 3.5e-24 116.3 70 75.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 3.3e-22 109.8 121 56.2
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-22 109.0 84 65.5
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-17 94.7 55 80.0
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.5e-17 93.6 77 66.2
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 9.4e-17 91.7 133 37.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.1e-16 90.5 106 42.5
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 7.4e-14 82.0 66 71.2
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 6.9e-12 75.5 139 36.7
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.2e-11 74.7 132 32.6
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.5e-10 68.9 137 31.4
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 8.5e-10 68.6 139 31.7
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-09 68.2 187 29.4
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.4e-09 67.8 116 36.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.9e-09 67.4 139 32.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 9.4e-09 65.1 139 33.8
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 9.4e-09 65.1 137 29.9
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 9.4e-09 65.1 140 36.4
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-08 64.7 137 31.4
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.1e-08 63.9 55 56.4
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 2.1e-08 63.9 135 30.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.7e-08 63.5 166 29.5
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.6e-08 63.2 139 30.9
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.1e-08 62.4 137 29.9
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 6.1e-08 62.4 62 56.5
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 1.0e-07 61.6 141 33.3
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 1.4e-07 61.2 142 35.2
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.4e-07 61.2 139 32.4
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.0e-07 60.1 139 30.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.0e-07 60.1 139 30.2
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.0e-07 60.1 139 30.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 5.1e-07 59.3 101 37.6
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 5.1e-07 59.3 137 30.7
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 6.7e-07 58.9 137 29.9
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 8.8e-07 58.5 119 35.3
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 2.0e-06 57.4 30 86.7


User provided reference genes

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