Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2998.8 1571 100.0
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 2585.8 1578 88.2
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 0.0e+00 2293.8 1637 77.9
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 2251.9 1642 77.0
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 2073.9 1595 72.0
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1950.6 1606 68.9
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 0.0e+00 1890.2 1599 67.2
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1820.4 1611 65.6
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 0.0e+00 1796.2 1617 65.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1627.1 1598 60.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1536.5 1598 59.4
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1443.3 1596 56.5
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 0.0e+00 1440.6 1586 56.4
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 0.0e+00 1292.3 1582 53.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 0.0e+00 1290.4 1603 52.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1231.9 1664 49.5
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1212.6 1597 50.5
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1207.2 1616 49.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1174.8 1692 47.1
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1166.8 1614 49.1
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1166.4 1591 48.7
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 0.0e+00 1163.7 1575 48.9
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1157.9 1627 48.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1133.2 1620 48.3
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1100.9 1699 45.7
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1100.5 1623 47.9
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1096.6 1605 47.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1095.9 1623 47.3
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1094.3 1622 47.2
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1092.4 1622 47.2
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1087.4 1627 47.2
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.8e-309 1066.6 1615 46.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 3.4e-308 1062.4 1615 46.7
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 9.9e-308 1060.8 1616 46.2
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 3.5e-305 1052.4 1598 46.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.1e-302 1043.1 1586 45.8
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 1.9e-298 1030.0 1625 45.5
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.9e-296 1022.3 1622 45.5
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 8.7e-296 1021.1 1600 45.2
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.7e-294 1015.8 1622 44.2
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.0e-291 1007.7 1609 45.2
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 2.4e-285 986.5 1627 43.7
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.0e-285 984.6 1640 44.1
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.4e-284 982.6 1622 44.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.0e-280 971.1 1631 44.3
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 2.3e-280 969.9 1662 43.8
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.0e-279 966.8 1624 44.1
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 9.7e-279 964.5 1653 43.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-276 957.2 1627 43.8
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-273 947.2 1672 43.2
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.5e-268 929.5 1608 43.0
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.5e-266 924.1 766 66.3
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.0e-265 918.3 1656 42.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 3.0e-264 916.4 1616 43.4
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 8.2e-262 908.3 1524 43.1
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.4e-253 879.0 1606 42.0
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.7e-251 874.0 1606 41.9
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.0e-251 872.5 1425 45.0
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 4.2e-250 869.4 1608 41.9
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 8.8e-248 861.7 1620 41.5
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.5e-247 860.9 1631 40.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 3.4e-247 859.8 1621 41.4
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.0e-243 848.2 1592 42.0
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 5.6e-242 842.4 1617 41.4
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.5e-239 834.3 1623 40.9
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.8e-237 827.4 1640 40.4
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 4.1e-237 826.2 1616 40.8
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.1e-233 813.9 1384 43.1
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.8e-233 813.5 1617 40.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.4e-231 806.6 1593 40.5
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 4.9e-230 802.7 1611 41.3
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 5.6e-226 789.3 1673 38.7
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.2e-221 773.5 1618 38.9
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.5e-218 764.6 1664 37.9
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.6e-217 761.1 1631 40.4
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.4e-213 747.3 1600 38.6
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 1.3e-211 741.5 1607 39.3
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.3e-211 740.7 1643 40.0
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.2e-207 728.4 1607 38.5
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 1.5e-207 728.0 1609 38.3
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.3e-203 714.9 1625 39.0
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.6e-201 708.0 1640 38.2
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.4e-200 704.9 1640 38.2
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 5.3e-200 703.0 1623 38.1
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.2e-199 701.8 1293 40.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-193 681.8 1608 37.7
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.4e-191 673.7 1620 36.4
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.8e-190 670.2 1751 36.2
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.9e-180 636.0 1661 36.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 1.8e-176 624.8 1603 35.7
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 5.3e-176 623.2 1620 36.0
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.5e-174 615.9 1223 39.2
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.8e-171 608.2 1612 36.2
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.7e-169 601.7 1594 35.6
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 6.3e-169 599.7 1617 34.7
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 8.2e-169 599.4 1601 35.0
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.1e-168 599.0 1732 34.9
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 7.7e-167 592.8 1739 34.4
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 2.3e-163 581.3 1611 34.6
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.8e-161 574.3 1653 33.9
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 2.8e-161 574.3 1262 38.4
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.7e-158 565.1 1611 34.5
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 3.8e-158 563.9 1610 34.5
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 3.8e-158 563.9 1362 36.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 1.4e-157 562.0 1632 34.3
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.0e-155 554.3 1601 34.4
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 3.9e-155 553.9 1602 34.5
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.7e-150 538.5 1605 33.6
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 3.1e-144 517.7 1611 33.5
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.2e-140 505.8 1612 33.6
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.0e-139 502.7 1524 34.5
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 4.0e-139 500.7 1624 33.4
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 2.8e-137 494.6 1630 33.8
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 8.3e-137 493.0 1211 38.6
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 1.7e-134 485.3 1592 32.2
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.8e-132 478.0 958 39.6
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.2e-130 472.6 711 46.7
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 7.5e-130 469.9 1359 34.9
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 6.6e-126 456.8 1673 32.6
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 9.8e-122 443.0 1580 31.3
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 4.1e-120 437.6 1613 31.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.6e-119 435.6 1597 30.0
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.5e-111 407.9 1483 31.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.6e-98 363.6 336 61.6
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.3e-78 298.9 702 37.5
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.9e-72 279.3 1654 27.8
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 9.3e-72 276.9 1536 29.4
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.4e-67 262.3 191 77.5
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 2.2e-65 255.8 1551 26.2
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.1e-63 249.2 206 68.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.0e-62 246.9 473 39.5
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 3.0e-62 245.4 672 35.0
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.6e-60 239.6 1292 28.9
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.5e-58 231.5 248 53.6
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.7e-55 222.2 1530 27.3
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 5.3e-51 208.0 212 60.4
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.7e-49 203.0 1583 26.7
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 8.5e-49 200.7 230 55.2
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-48 199.5 478 37.9
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.3e-44 184.5 174 63.8
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 3.1e-43 182.2 209 56.5
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 7.0e-43 181.0 1826 25.7
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-39 170.2 1289 26.3
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.5e-34 151.8 374 35.8
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 2.3e-30 139.4 193 52.8
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 4.5e-26 125.2 510 33.9
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 2.5e-24 119.4 89 74.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.4e-19 102.8 1528 24.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.1e-19 102.4 182 42.3
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.8e-17 95.5 234 38.5
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.8e-17 95.5 147 46.3
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.9e-16 93.2 920 24.9
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 6.1e-15 88.2 137 41.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.2e-14 85.1 614 28.0
Psat0s4895g0040 Pisum sativum HOM05D002020 ORTHO05D005088 2.0e-13 83.2 73 65.8
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.1e-11 75.5 148 39.9
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.2e-07 63.9 227 30.0
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-07 63.2 1400 23.9
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 2.1e-07 63.2 108 49.1
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.1e-06 59.3 1444 23.0


User provided reference genes

Program Settings