Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G085600 Glycine max HOM05D000008 ORTHO05D000005 1.9e-119 432.6 223 100.0
Glyma.05G040700 Glycine max HOM05D000008 ORTHO05D000005 3.9e-109 398.3 227 93.0
VMungo1215G0548 Vigna mungo HOM05D000008 ORTHO05D000005 3.1e-98 362.1 227 85.5
Phvul.003G203900 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 1.6e-97 359.8 227 85.0
Lj4g0012723 Lotus japonicus HOM05D000008 ORTHO05D000005 9.5e-71 270.8 232 69.4
Medtr4g105130 Medicago truncatula HOM05D000008 ORTHO05D000005 4.9e-67 258.5 215 71.6
Ca_14267_v3 Cicer arietinum L. HOM05D000008 ORTHO05D000005 8.3e-67 257.7 227 69.2
Psat4g059720 Pisum sativum HOM05D000008 ORTHO05D000005 4.6e-65 251.9 223 69.1
TPR.G37453 Trifolium pratense HOM05D000008 ORTHO05D000005 9.5e-63 244.2 234 65.4
Phvul.009G174900 Phaseolus vulgaris HOM05D000008 ORTHO05D000005 3.2e-58 229.2 226 59.7
QL10p007164 Quercus lobata HOM05D000008 ORTHO05D000005 1.6e-54 216.9 213 55.9
QL10p007866 Quercus lobata HOM05D000008 ORTHO05D000005 1.6e-54 216.9 213 55.9
Glyma.04G187300 Glycine max HOM05D000008 ORTHO05D000005 5.8e-52 208.4 234 59.4
Manes.14G061700 Manihot esculenta HOM05D000008 ORTHO05D000005 2.2e-51 206.5 222 52.3
Thecc.03G020800 Theobroma cacao HOM05D000008 ORTHO05D000005 2.9e-51 206.1 228 52.2
Duzib068G0739 Durio zibethinus HOM05D000008 ORTHO05D000005 2.4e-50 203.0 225 51.1
CiPaw.11G021800 Carya illinoinensis HOM05D000008 ORTHO05D000005 7.1e-50 201.4 231 55.0
Cfa019200 Carpinus fangiana HOM05D000008 ORTHO05D000005 1.6e-49 200.3 210 55.2
Haze_07568 Corylus avellana HOM05D000008 ORTHO05D000005 7.8e-49 198.0 212 54.7
Glyma.06G178600 Glycine max HOM05D000008 ORTHO05D000005 1.1e-47 194.1 225 58.2
Lalb_Chr12g0201851 Lupinus albus HOM05D000008 ORTHO05D000005 2.0e-44 183.3 243 56.8
Sabra15G0106100 Salix brachista HOM05D000008 ORTHO05D000005 2.0e-44 183.3 229 48.9
Lalb_Chr07g0182941 Lupinus albus HOM05D000008 ORTHO05D000005 4.4e-44 182.2 235 55.7
Hma1.2p1_0046F.1_g026990 Hydrangea macrophylla HOM05D000008 ORTHO05D000005 4.1e-42 175.6 224 48.7
Dinv38547 Davidia involucrata HOM05D000008 ORTHO05D000005 1.6e-41 173.7 200 49.5
Potri.015G082700 Populus trichocarpa HOM05D000008 ORTHO05D000005 1.1e-39 167.5 228 45.6
CSS0021525 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 1.5e-39 167.2 203 51.2
CiPaw.12G030100 Carya illinoinensis HOM05D000008 ORTHO05D000005 2.5e-39 166.4 215 51.6
MD06G1167200 Malus domestica HOM05D000008 ORTHO05D000005 2.5e-39 166.4 243 49.0
CSS0024689 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 9.6e-39 164.5 203 50.7
Lalb_Chr13g0297681 Lupinus albus HOM05D000008 ORTHO05D000005 2.1e-38 163.3 238 53.4
Potri.012G084100 Populus trichocarpa HOM05D000008 ORTHO05D000005 4.7e-38 162.2 227 44.5
Sabra12G0060500 Salix brachista HOM05D000008 ORTHO05D000005 6.2e-38 161.8 228 44.7
MD14G1172900 Malus domestica HOM05D000008 ORTHO05D000005 8.1e-38 161.4 237 47.3
TAR622G0832 Trochodendron aralioides HOM05D000008 ORTHO05D000005 4.4e-36 155.6 210 46.7
Prupe.5G167100 Prunus persica HOM05D000008 ORTHO05D000005 8.4e-35 151.4 219 47.5
Nn3g16738 Nelumbo nucifera HOM05D000008 ORTHO05D000005 1.1e-34 151.0 207 44.4
TAR374G1674 Trochodendron aralioides HOM05D000008 ORTHO05D000005 3.0e-32 142.9 190 46.3
Eucgr.B00229 Eucalyptus grandis HOM05D000008 ORTHO05D000005 2.5e-31 139.8 240 42.5
Duzib205G0349 Durio zibethinus HOM05D000008 ORTHO05D000005 7.3e-31 138.3 225 42.2
Manes.06G109000 Manihot esculenta HOM05D000008 ORTHO05D000005 8.1e-30 134.8 152 51.3
Sed0023085 Sechium edule HOM05D000008 ORTHO05D000005 1.2e-28 131.0 230 37.0
CSS0031776 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D000005 2.6e-28 129.8 220 43.6
TAR629G2928 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.9e-27 126.3 208 41.8
RcHm_v2.0_Chr7g0192781 Rosa chinensis HOM05D000008 ORTHO05D000005 2.4e-26 123.2 220 39.1
MBI16_g23838_MAGBIO Magnolia biondii HOM05D000008 ORTHO05D000005 3.2e-26 122.9 196 41.8
Sed0010815 Sechium edule HOM05D000008 ORTHO05D000005 2.7e-25 119.8 211 36.5
MSTRG.23159 Avicennia marina HOM05D000008 ORTHO05D000005 3.5e-25 119.4 200 37.5
FAN08G2361 Fragaria x ananassa HOM05D000008 ORTHO05D000005 1.8e-24 117.1 227 39.2
FAN04G2406 Fragaria x ananassa HOM05D000008 ORTHO05D000005 2.3e-24 116.7 227 39.2
Psat5g115920 Pisum sativum HOM05D000008 ORTHO05D000005 3.0e-24 116.3 225 45.8
Aqoxy5G03786 Aquilegia oxysepala HOM05D000008 ORTHO05D000005 3.9e-24 115.9 209 39.7
Ciclev10024338m.g Citrus clementina HOM05D000008 ORTHO05D000005 6.7e-24 115.2 241 41.5
Cc04_g11760 Coffea canephora HOM05D000008 ORTHO05D000005 6.7e-24 115.2 209 43.1
Cc08_g01850 Coffea canephora HOM05D000008 ORTHO05D000005 6.7e-24 115.2 209 43.1
FAN18G3917 Fragaria x ananassa HOM05D000008 ORTHO05D000005 6.7e-24 115.2 227 38.8
FvH4_5g06070 Fragaria vesca HOM05D000008 ORTHO05D000005 8.7e-24 114.8 227 38.8
FAN13G3178 Fragaria x ananassa HOM05D000008 ORTHO05D000005 4.3e-23 112.5 227 38.8
Medtr3g077110 Medicago truncatula HOM05D000008 ORTHO05D000005 5.6e-23 112.1 215 46.5
Cpa.g.sc110.11 Carica papaya HOM05D000008 ORTHO05D000005 4.8e-22 109.0 227 38.8
Dinv20608 Davidia involucrata HOM05D000008 ORTHO05D000005 4.8e-22 109.0 209 40.2
Peaxi162Scf00763g00441 Petunia axillaris HOM05D000008 ORTHO05D000005 2.0e-20 103.6 193 38.3
arahy.Tifrunner.gnm1.ann1.K4CW46 Arachis hypogaea HOM05D000008 ORTHO05D000005 4.5e-20 102.4 245 42.4
Nitab4.5_0005004g0050 Nicotiana tabacum HOM05D000008 ORTHO05D000005 7.6e-20 101.7 195 36.4
arahy.Tifrunner.gnm1.ann1.H626TW Arachis hypogaea HOM05D000008 ORTHO05D000005 2.2e-19 100.1 243 43.6
TAR371G0014 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.2e-19 100.1 205 35.6
DCAR_016459 Daucus carota HOM05D000008 ORTHO05D000005 1.4e-18 97.4 216 36.1
Rhsim08G0176200 Rhododendron simsii HOM05D000008 ORTHO05D000005 1.4e-18 97.4 208 36.5
TWI14G0797 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 1.9e-18 97.1 189 43.4
CsaV3_1G001180 Cucumis sativus L. HOM05D000008 ORTHO05D000005 1.6e-17 94.0 202 38.6
CsaV3_1G008780 Cucumis sativus L. HOM05D000008 ORTHO05D000005 1.6e-17 94.0 231 32.0
MELO3C002292.2 Cucumis melo HOM05D000008 ORTHO05D000005 2.1e-17 93.6 256 30.5
Hma1.2p1_0592F.1_g185590 Hydrangea macrophylla HOM05D000008 ORTHO05D000005 5.1e-16 89.0 174 40.8
Actinidia19124 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.1e-15 87.8 190 39.5
Actinidia24588 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.1e-15 87.8 190 39.5
PSO210G1848 Papaver somniferum HOM05D000008 ORTHO05D000005 1.9e-15 87.0 226 35.4
ClCG06G017300 Citrullus lanatus HOM05D000008 ORTHO05D000005 3.3e-15 86.3 208 38.5
ClCG01G013430 Citrullus lanatus HOM05D000008 ORTHO05D000005 4.3e-15 85.9 228 32.0
COL.COLO4_30166 Corchorus olitorius HOM05D000008 ORTHO05D000005 5.6e-15 85.5 134 47.0
Actinidia25112 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.3e-14 84.3 187 40.6
TAR314G0008 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.1e-14 83.6 96 50.0
vmacro19316 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 2.8e-14 83.2 162 37.7
CAN.G338.19 Capsicum annuum HOM05D000008 ORTHO05D000005 3.7e-14 82.8 187 30.5
MSTRG.4354 Avicennia marina HOM05D000008 ORTHO05D000005 1.8e-13 80.5 199 34.7
Dinv06821 Davidia involucrata HOM05D007697 ORTHO05D000005 4.0e-13 79.3 116 40.5
PSO210G0633 Papaver somniferum HOM05D000008 ORTHO05D000005 4.0e-13 79.3 226 33.6
Dinv05600 Davidia involucrata HOM05D000008 ORTHO05D000005 2.0e-12 77.0 116 39.7
vmacro16638 Vaccinium macrocarpon HOM05D000008 ORTHO05D000005 2.6e-12 76.6 189 37.6
Dinv05735 Davidia involucrata HOM05D000008 ORTHO05D000005 4.5e-12 75.9 116 38.8
Sed0003017 Sechium edule HOM05D000008 ORTHO05D000005 7.6e-12 75.1 136 42.6
Rhsim12G0167200 Rhododendron simsii HOM05D000008 ORTHO05D000005 1.0e-11 74.7 208 32.7
DCAR_021580 Daucus carota HOM05D000008 ORTHO05D000005 1.7e-11 73.9 201 33.8
MSTRG.9690 Avicennia marina HOM05D000008 ORTHO05D000005 6.5e-11 72.0 201 31.3
TAR371G1084 Trochodendron aralioides HOM05D000008 ORTHO05D000005 6.5e-11 72.0 197 29.9
Nitab4.5_0005842g0010 Nicotiana tabacum HOM05D000008 ORTHO05D000005 1.1e-10 71.2 160 31.2
Sed0015132 Sechium edule HOM05D000008 ORTHO05D000005 1.1e-10 71.2 121 47.1
MELO3C015029.2 Cucumis melo HOM05D000008 ORTHO05D000005 2.5e-10 70.1 203 32.5
TWI39G0017 Tripterygium wilfordii HOM05D000008 ORTHO05D000005 2.5e-10 70.1 191 37.7
CANSAT80G0004 Cannabis sativa HOM05D000008 ORTHO05D000005 2.7e-09 66.6 167 37.7
Eucgr.K02806 Eucalyptus grandis HOM05D000008 ORTHO05D000005 2.7e-09 66.6 193 32.1
PGR083G0171 Punica granatum HOM05D000008 ORTHO05D000005 3.5e-09 66.2 216 32.9
Actinidia19352 Actinidia chinensis HOM05D000008 ORTHO05D000005 5.1e-08 62.4 80 52.5
Peaxi162Scf00089g01411 Petunia axillaris HOM05D000008 ORTHO05D000005 5.1e-08 62.4 195 28.2
Lj5A128T64 Lonicera japonica HOM05D000008 ORTHO05D000005 1.1e-07 61.2 218 30.3
CAN.G993.25 Capsicum annuum HOM05D000008 ORTHO05D000005 1.3e-06 57.8 149 27.5


User provided reference genes

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