Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 7.5e-80 300.4 149 100.0
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 8.3e-63 243.8 150 86.7
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 4.1e-54 214.9 147 79.6
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 6.6e-44 181.0 142 72.5
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 2.1e-42 176.0 151 67.5
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 4.7e-42 174.9 123 76.4
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 1.2e-40 170.2 131 69.5
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 1.5e-40 169.9 147 69.4
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 1.7e-39 166.4 150 63.3
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 4.6e-37 158.3 149 60.4
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 1.7e-36 156.4 148 57.4
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.5e-35 153.3 146 57.5
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 2.5e-35 152.5 146 56.8
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 5.6e-35 151.4 146 56.8
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 5.6e-35 151.4 146 58.9
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 1.1e-33 147.1 149 57.0
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 2.4e-33 146.0 146 55.5
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 8.9e-33 144.1 147 54.4
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 1.5e-32 143.3 134 57.5
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 2.0e-32 142.9 140 59.3
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 2.6e-32 142.5 141 55.3
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 3.4e-32 142.1 140 58.6
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 4.4e-32 141.7 147 52.4
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 7.6e-32 141.0 140 58.6
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 7.6e-32 141.0 143 56.6
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 9.9e-32 140.6 133 57.1
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 3.8e-31 138.7 141 56.0
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 4.9e-31 138.3 149 50.3
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 6.4e-31 137.9 153 52.9
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 1.1e-30 137.1 145 53.1
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 1.4e-30 136.7 147 51.0
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.9e-30 136.3 146 54.1
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 1.9e-30 136.3 148 52.0
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 1.2e-29 133.7 142 56.3
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.2e-29 133.7 144 50.7
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.2e-29 133.7 144 50.7
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 2.1e-29 132.9 140 57.1
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 2.7e-29 132.5 156 50.6
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 2.7e-29 132.5 155 47.1
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 2.7e-29 132.5 144 50.7
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 2.7e-29 132.5 133 57.1
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 3.5e-29 132.1 143 55.9
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.0e-28 130.6 140 55.7
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 1.7e-28 129.8 141 52.5
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 3.9e-28 128.6 148 50.0
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 3.9e-28 128.6 141 53.9
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 3.9e-28 128.6 149 51.0
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 5.1e-28 128.3 140 55.7
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 8.7e-28 127.5 148 51.4
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 8.7e-28 127.5 136 54.4
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 1.1e-27 127.1 131 57.3
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 7.3e-27 124.4 148 50.7
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 1.6e-26 123.2 161 46.0
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 2.1e-26 122.9 124 57.3
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 2.8e-26 122.5 130 54.6
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 3.6e-26 122.1 137 51.1
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 4.7e-26 121.7 153 51.0
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 6.2e-26 121.3 153 47.1
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 6.2e-26 121.3 153 46.4
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 1.8e-25 119.8 130 53.1
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 5.2e-25 118.2 144 51.4
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 5.2e-25 118.2 149 47.7
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 9.0e-25 117.5 132 50.8
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 9.0e-25 117.5 148 48.0
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 1.5e-24 116.7 149 51.0
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 2.0e-24 116.3 130 50.8
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 2.0e-24 116.3 138 50.0
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 4.4e-24 115.2 137 49.6
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.3e-23 113.6 140 49.3
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.7e-23 113.2 137 48.9
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 2.9e-23 112.5 130 51.5
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 3.8e-23 112.1 124 50.0
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 4.9e-23 111.7 115 53.9
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 1.4e-22 110.2 143 49.7
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.4e-22 110.2 107 56.1
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 4.2e-22 108.6 122 51.6
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 6.0e-21 104.8 141 49.6
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 2.3e-20 102.8 112 48.2
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 1.1e-19 100.5 124 47.6
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 1.1e-19 100.5 106 55.7
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.6e-18 96.7 144 46.5
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 2.1e-18 96.3 110 52.7
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.8e-18 95.9 152 41.4
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 2.8e-18 95.9 143 46.9
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 2.8e-18 95.9 143 46.9
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 1.8e-17 93.2 125 44.8
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 4.0e-17 92.0 131 42.7
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 6.9e-17 91.3 122 49.2
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 2.0e-16 89.7 126 43.7
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 2.6e-16 89.4 126 44.4
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 2.6e-16 89.4 130 46.9
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 7.6e-16 87.8 108 47.2
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 9.9e-16 87.4 128 43.8
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 1.3e-15 87.0 143 41.3
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 1.3e-15 87.0 125 44.0
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 1.7e-15 86.7 125 44.0
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 1.7e-15 86.7 125 44.0
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 2.2e-15 86.3 125 44.0
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 3.8e-15 85.5 125 44.0
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 6.4e-15 84.7 81 55.6
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 6.4e-15 84.7 89 52.8
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 9.3e-14 80.9 81 56.8
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 1.2e-13 80.5 146 40.4
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 4.6e-13 78.6 125 39.2
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 1.8e-12 76.6 126 41.3
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 3.0e-12 75.9 141 41.1
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 3.9e-12 75.5 125 40.0
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 6.2e-10 68.2 85 44.7
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 8.1e-10 67.8 165 36.4


User provided reference genes

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