Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G083800 Glycine max HOM05D006386 ORTHO05D007575 5.2e-131 471.1 242 100.0
Glyma.05G016300 Glycine max HOM05D006386 ORTHO05D007575 4.1e-112 408.3 234 88.5
Phvul.002G142200 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 6.2e-108 394.4 242 82.6
Phvul.003G180600 Phaseolus vulgaris HOM05D006386 ORTHO05D007575 5.8e-106 387.9 240 81.7
VMungo1215G2864 Vigna mungo HOM05D006386 ORTHO05D007575 9.8e-106 387.1 242 81.0
Lj6g0003397 Lotus japonicus HOM05D006386 ORTHO05D007575 1.6e-87 326.6 242 69.4
Lalb_Chr13g0302571 Lupinus albus HOM05D006386 ORTHO05D007575 9.0e-83 310.8 241 66.8
Ca_21735_v3 Cicer arietinum L. HOM05D006386 ORTHO05D007575 5.8e-82 308.1 238 67.2
arahy.Tifrunner.gnm1.ann1.HL5ANR Arachis hypogaea HOM05D006386 ORTHO05D007575 9.9e-82 307.4 236 67.4
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 1.7e-81 306.6 241 65.6
arahy.Tifrunner.gnm1.ann1.X9R15Y Arachis hypogaea HOM05D006386 ORTHO05D007575 4.3e-77 292.0 258 62.0
TPR.G23873 Trifolium pratense HOM05D006386 ORTHO05D007575 4.0e-75 285.4 238 63.0
Medtr4g112830 Medicago truncatula HOM05D006386 ORTHO05D007575 9.0e-75 284.3 239 61.9
Medtr4g112610 Medicago truncatula HOM05D006386 ORTHO05D007575 2.4e-72 276.2 243 60.1
COL.COLO4_08656 Corchorus olitorius HOM05D006386 ORTHO05D007575 4.2e-64 248.8 245 55.1
Dinv36853 Davidia involucrata HOM05D006386 ORTHO05D007575 4.2e-64 248.8 245 52.7
Duzib068G0691 Durio zibethinus HOM05D006386 ORTHO05D007575 5.5e-64 248.4 245 52.2
Cfa019518 Carpinus fangiana HOM05D006386 ORTHO05D007575 2.7e-63 246.1 246 56.9
GSVIVG01008195001 Vitis vinifera HOM05D006386 ORTHO05D007575 6.0e-63 245.0 245 51.8
QL10p021984 Quercus lobata HOM05D006386 ORTHO05D007575 3.9e-62 242.3 241 55.2
Thecc.03G113300 Theobroma cacao HOM05D006386 ORTHO05D007575 5.1e-62 241.9 245 51.8
FvH4_5g13000 Fragaria vesca HOM05D006386 ORTHO05D007575 8.7e-62 241.1 245 50.6
FAN08G0928 Fragaria x ananassa HOM05D006386 ORTHO05D007575 8.7e-62 241.1 245 51.0
CiPaw.16G081700 Carya illinoinensis HOM05D006386 ORTHO05D007575 1.1e-61 240.7 245 54.3
FAN13G1489 Fragaria x ananassa HOM05D006386 ORTHO05D007575 3.3e-61 239.2 245 51.0
FAN18G3466 Fragaria x ananassa HOM05D006386 ORTHO05D007575 9.6e-61 237.7 245 49.8
Gorai.007G040700 Gossypium raimondii HOM05D006386 ORTHO05D007575 1.3e-60 237.3 247 51.8
RcHm_v2.0_Chr7g0184161 Rosa chinensis HOM05D006386 ORTHO05D007575 2.8e-60 236.1 245 49.8
Gohir.D11G038000 Gossypium hirsutum HOM05D006386 ORTHO05D007575 6.2e-60 235.0 245 51.0
CANSAT80G2620 Cannabis sativa HOM05D006386 ORTHO05D007575 8.2e-60 234.6 245 49.8
Psat4g044400 Pisum sativum HOM05D006386 ORTHO05D007575 8.2e-60 234.6 240 55.8
CSS0007083 Camellia sinensis var. sinensis HOM05D006386 ORTHO05D007575 1.1e-59 234.2 245 49.8
arahy.Tifrunner.gnm1.ann1.7DA3AY Arachis hypogaea HOM05D006386 ORTHO05D007575 4.1e-59 232.3 241 56.4
Ciclev10021913m.g Citrus clementina HOM05D006386 ORTHO05D007575 4.5e-58 228.8 245 48.2
Atru.chr9.671 Acer truncatum HOM05D006386 ORTHO05D007575 1.3e-57 227.3 243 47.7
Gohir.A11G034600 Gossypium hirsutum HOM05D006386 ORTHO05D007575 5.0e-57 225.3 248 50.0
Lj9A435T83 Lonicera japonica HOM05D006386 ORTHO05D007575 6.5e-57 224.9 238 51.3
Actinidia36923 Actinidia chinensis HOM05D006386 ORTHO05D007575 1.4e-56 223.8 245 46.9
TWI81G0025 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 3.2e-56 222.6 245 49.0
AUR62032161 Chenopodium quinoa HOM05D006386 ORTHO05D007575 2.7e-55 219.5 243 46.1
EL10Ac9g20981 Beta vulgaris HOM05D006386 ORTHO05D007575 1.3e-54 217.2 244 46.3
Sed0015508 Sechium edule HOM05D006386 ORTHO05D007575 1.8e-54 216.9 244 50.0
Manes.01G023400 Manihot esculenta HOM05D006386 ORTHO05D007575 2.3e-54 216.5 244 46.7
Potri.015G055500 Populus trichocarpa HOM05D006386 ORTHO05D007575 2.3e-54 216.5 244 48.4
Sopen03g033610 Solanum pennellii HOM05D006386 ORTHO05D007575 3.0e-54 216.1 244 45.5
PGSC0003DMG400024511 Solanum tuberosum HOM05D006386 ORTHO05D007575 5.7e-53 211.8 244 44.7
Solyc03g114520.3 Solanum lycopersicum HOM05D006386 ORTHO05D007575 1.3e-52 210.7 244 44.3
THA.LOC104819388 Tarenaya hassleriana HOM05D006386 ORTHO05D007575 1.3e-52 210.7 251 47.0
Hma1.2p1_0340F.1_g130200 Hydrangea macrophylla HOM05D006386 ORTHO05D007575 2.2e-52 209.9 244 46.7
MD14G1218500 Malus domestica HOM05D006386 ORTHO05D007575 1.1e-51 207.6 245 48.2
Hund02537 Selenicereus undatus HOM05D006386 ORTHO05D007575 4.1e-51 205.7 241 45.6
Nitab4.5_0000646g0180 Nicotiana tabacum HOM05D006386 ORTHO05D007575 5.3e-51 205.3 244 43.4
Nn3g17620 Nelumbo nucifera HOM05D006386 ORTHO05D007575 9.0e-51 204.5 239 47.3
Oeu010193.1 Olea europaea HOM05D006386 ORTHO05D007575 3.4e-50 202.6 238 46.6
ClCG06G015230 Citrullus lanatus HOM05D006386 ORTHO05D007575 1.0e-49 201.1 244 48.4
Cc04_g07860 Coffea canephora HOM05D006386 ORTHO05D007575 2.2e-49 199.9 243 44.9
Sc04g0004070 Simmondsia chinensis HOM05D006386 ORTHO05D007575 2.9e-49 199.5 255 45.1
Sabra15G0080700 Salix brachista HOM05D006386 ORTHO05D007575 8.5e-49 198.0 271 42.8
TAR629G0047 Trochodendron aralioides HOM05D002187 ORTHO05D002243 1.1e-48 197.6 190 53.7
Nitab4.5_0004342g0080 Nicotiana tabacum HOM05D006386 ORTHO05D007575 2.5e-48 196.4 244 41.8
Eucgr.K02638 Eucalyptus grandis HOM05D006386 ORTHO05D007575 7.2e-48 194.9 248 45.2
SalBow1G4471 Salvia bowleyana HOM05D006386 ORTHO05D007575 6.1e-47 191.8 239 43.5
Prupe.5G212600 Prunus persica HOM05D006386 ORTHO05D007575 1.0e-46 191.0 241 43.6
vmacro17651 Vaccinium macrocarpon HOM05D006386 ORTHO05D007575 1.8e-46 190.3 178 53.4
Thhalv10003465m.g Eutrema salsugineum HOM05D006386 ORTHO05D007575 3.0e-46 189.5 246 42.7
AL7G44320 Arabidopsis lyrata HOM05D006386 ORTHO05D007575 2.2e-44 183.3 246 42.7
PGR044G0997 Punica granatum HOM05D006386 ORTHO05D007575 2.8e-44 183.0 241 45.2
Aa31LG4G9830 Aethionema arabicum HOM05D006386 ORTHO05D007575 3.7e-44 182.6 248 42.3
HanXRQChr16g0502011 Helianthus annuus HOM05D006386 ORTHO05D007575 4.8e-44 182.2 245 42.4
AT5G35520 Arabidopsis thaliana HOM05D006386 ORTHO05D007575 1.1e-43 181.0 246 41.9
Lsat_1_v5_gn_4_112761 Lactuca sativa HOM05D006386 ORTHO05D007575 1.2e-42 177.6 241 41.5
Carub.0007s3127 Capsella rubella HOM05D006386 ORTHO05D007575 1.0e-41 174.5 250 39.2
MSTRG.4502 Avicennia marina HOM05D006386 ORTHO05D007575 2.9e-41 172.9 242 41.7
Migut.D01482 Erythranthe guttata HOM05D006386 ORTHO05D007575 3.8e-41 172.6 242 43.0
CARHR217490 Cardamine hirsuta HOM05D006386 ORTHO05D007575 5.0e-41 172.2 247 39.7
Sp7g06840 Schrenkiella parvula HOM05D006386 ORTHO05D007575 5.5e-40 168.7 249 39.4
BcaB06g26945 Brassica carinata HOM05D006386 ORTHO05D007575 9.4e-40 167.9 246 40.2
PSO017G3209 Papaver somniferum HOM05D006386 ORTHO05D007575 1.6e-39 167.2 224 40.2
Lsat_1_v5_gn_4_112801 Lactuca sativa HOM05D006386 ORTHO05D007575 2.7e-39 166.4 235 39.6
C04p43230 Brassica napus HOM05D006386 ORTHO05D007575 4.7e-39 165.6 241 40.2
PSO478G3500 Papaver somniferum HOM05D006386 ORTHO05D007575 7.9e-39 164.9 224 39.7
SGA_v2.0_scaffold42G16024 Striga asiatica HOM05D006386 ORTHO05D007575 6.7e-38 161.8 261 39.5
Aqoxy6G00629 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 2.0e-37 160.2 233 38.6
ECA246G4419 Erigeron canadensis HOM05D006386 ORTHO05D007575 3.3e-37 159.5 239 38.9
ATR0730G046 Amborella trichopoda HOM05D006386 ORTHO05D007575 4.4e-37 159.1 243 38.3
unitig_62.g23762 Utricularia gibba HOM05D006386 ORTHO05D007575 7.4e-37 158.3 262 38.2
BcaC02g09476 Brassica carinata HOM05D006386 ORTHO05D007575 1.3e-36 157.5 241 39.0
CDE02G3865 Ceratophyllum demersum HOM05D006386 ORTHO05D007575 1.7e-36 157.1 242 38.0
BolC4t25901H Brassica oleracea HOM05D006386 ORTHO05D007575 2.2e-36 156.8 241 39.0
ECA232G1078 Erigeron canadensis HOM05D006386 ORTHO05D007575 3.1e-35 152.9 244 34.4
CsaV3_1G003130 Cucumis sativus L. HOM05D006386 ORTHO05D007575 5.3e-35 152.1 244 40.2
Actinidia33576 Actinidia chinensis HOM05D006386 ORTHO05D007575 9.1e-35 151.4 260 37.3
Peaxi162Scf00119g00118 Petunia axillaris HOM05D006386 ORTHO05D007575 2.6e-34 149.8 252 38.5
SHI18989 Sapria himalayana HOM05D006386 ORTHO05D007575 3.8e-33 146.0 179 43.0
Aqoxy3G00630 Aquilegia oxysepala HOM05D006386 ORTHO05D007575 6.5e-33 145.2 239 36.0
HPP92_015441 Vanilla planifolia HOM05D006386 ORTHO05D007575 6.5e-33 145.2 243 35.4
MD06G1208100 Malus domestica HOM05D006386 ORTHO05D007575 5.2e-30 135.6 245 38.0
MBI10_g16789_MAGBIO Magnolia biondii HOM05D006386 ORTHO05D007575 2.0e-29 133.7 172 42.4
MSTRG.4503 Avicennia marina HOM05D006386 ORTHO05D007575 1.3e-28 131.0 177 41.2
A04p09730 Brassica napus HOM05D006386 ORTHO05D007575 3.7e-28 129.4 244 34.4
Nitab4.5_0005402g0030 Nicotiana tabacum HOM05D002295 ORTHO05D007575 1.4e-27 127.5 239 33.5
BraA04t16635Z Brassica rapa HOM05D006386 ORTHO05D007575 3.5e-26 122.9 248 33.5
Ca_24277_v3 Cicer arietinum L. HOM05D006386 ORTHO05D007575 5.5e-24 115.5 105 64.8
CAN.G982.14 Capsicum annuum HOM05D006386 ORTHO05D007575 8.0e-23 111.7 137 43.8
Zm00001eb433940 Zea mays HOM05D006386 ORTHO05D007575 1.8e-22 110.5 203 33.5
AUR62036917 Chenopodium quinoa HOM05D006386 ORTHO05D007575 6.8e-22 108.6 143 40.6
Cpa.g.sc53.22 Carica papaya HOM05D006386 ORTHO05D007575 8.8e-22 108.2 130 46.9
Os02g0620100 Oryza sativa ssp. japonica HOM05D006386 ORTHO05D007575 4.4e-21 105.9 246 29.3
TWI81G0622 Tripterygium wilfordii HOM05D006386 ORTHO05D007575 2.2e-20 103.6 146 42.5
Cpa.g.sc53.23 Carica papaya HOM05D006386 ORTHO05D007575 1.6e-18 97.4 76 60.5
Zm00001eb065850 Zea mays HOM05D006386 ORTHO05D007575 1.6e-18 97.4 202 32.7
DCAR_029598 Daucus carota HOM05D006386 ORTHO05D007575 1.4e-14 84.3 142 35.2
Actinidia27067 Actinidia chinensis HOM05D006386 ORTHO05D007575 4.4e-13 79.3 60 63.3
Medtr4g110120 Medicago truncatula HOM05D006386 ORTHO05D007575 1.4e-11 74.3 61 62.3
MELO3C028557.2 Cucumis melo HOM05D006386 ORTHO05D007575 5.4e-11 72.4 58 56.9
Mapoly0051s0086 Marchantia polymorpha HOM05D006386 ORTHO05D007575 7.3e-08 62.0 149 26.8


User provided reference genes

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