Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.6e-162 575.5 328 100.0
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 2.7e-154 548.9 328 95.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.7e-130 469.2 331 83.7
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 1.5e-125 453.4 331 82.5
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 4.1e-115 418.7 329 71.1
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 3.9e-113 412.1 330 69.4
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 8.6e-113 411.0 322 75.2
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.5e-112 409.5 332 73.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.7e-105 386.7 313 70.0
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.3e-104 382.1 342 67.5
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.5e-98 362.5 345 64.9
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 6.0e-98 361.7 342 65.2
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.0e-97 360.9 334 64.1
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 6.4e-92 341.7 332 62.0
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 8.4e-92 341.3 330 64.2
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 4.2e-91 339.0 340 62.6
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 5.4e-91 338.6 341 62.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.3e-89 333.2 347 59.4
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 9.6e-88 327.8 335 57.3
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.8e-86 323.6 339 60.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-84 317.4 341 57.2
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.9e-83 313.5 334 59.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.9e-83 313.5 334 61.7
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 6.0e-82 308.5 334 59.6
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.0e-81 307.8 365 52.1
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 6.7e-81 305.1 328 62.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.9e-80 303.5 329 61.1
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.9e-80 303.5 340 55.9
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.3e-80 302.8 325 61.8
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 3.3e-80 302.8 334 59.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.8e-79 299.7 335 53.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.8e-79 298.9 336 57.4
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.1e-78 297.7 335 56.4
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 1.4e-78 297.4 334 53.9
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 1.4e-78 297.4 296 65.2
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 3.1e-78 296.2 335 52.8
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.3e-78 295.4 344 59.6
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.2e-76 290.0 341 53.1
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 2.2e-76 290.0 331 58.9
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 4.9e-76 288.9 332 56.0
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.5e-76 288.5 341 54.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 8.4e-76 288.1 346 54.9
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 4.2e-75 285.8 347 55.6
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 7.9e-74 281.6 329 56.2
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.3e-73 280.0 342 53.5
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 6.7e-73 278.5 336 56.8
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 1.9e-72 276.9 339 54.3
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 2.5e-72 276.6 342 55.0
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.6e-71 273.9 335 50.7
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 4.8e-71 272.3 315 57.1
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 6.3e-71 271.9 337 53.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.2e-69 267.7 342 53.8
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-69 266.5 335 47.8
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.6e-69 266.5 506 42.3
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 7.6e-69 265.0 335 52.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.2e-68 263.5 320 50.0
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.9e-68 263.1 342 51.8
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 5.0e-68 262.3 373 46.4
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 6.5e-68 261.9 327 51.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.6e-66 257.3 342 50.3
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.6e-66 257.3 299 53.2
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 4.6e-66 255.8 327 52.9
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.3e-65 254.2 322 54.0
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.3e-65 254.2 336 52.1
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 6.7e-65 251.9 331 47.4
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.1e-64 251.1 342 50.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 3.3e-64 249.6 297 55.9
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 5.7e-64 248.8 330 46.1
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.3e-63 247.7 303 53.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.2e-63 246.9 348 46.6
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.8e-63 246.5 329 45.6
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 2.8e-63 246.5 346 46.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.7e-63 246.1 331 50.5
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 6.3e-63 245.4 335 51.9
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.4e-62 244.2 333 51.4
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 9.1e-62 241.5 259 61.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.2e-61 241.1 335 51.3
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.2e-61 241.1 335 51.3
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.5e-61 240.7 317 52.4
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.5e-61 240.7 332 47.9
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 2.0e-61 240.4 332 52.7
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 2.6e-61 240.0 260 61.2
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.6e-61 240.0 332 50.9
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.4e-59 234.2 337 47.2
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.2e-59 233.0 340 45.6
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.5e-59 232.3 332 49.4
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 7.2e-59 231.9 338 52.1
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 7.2e-59 231.9 331 45.6
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.6e-58 229.6 342 47.7
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.1e-58 228.8 292 46.6
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 6.1e-58 228.8 343 45.8
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 7.9e-58 228.4 312 51.0
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 1.8e-57 227.3 351 43.9
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 6.7e-57 225.3 240 56.2
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.5e-56 224.2 344 43.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.7e-56 222.2 312 44.9
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 5.7e-56 222.2 332 42.8
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.8e-54 217.2 335 45.4
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 4.1e-54 216.1 292 44.9
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.3e-54 215.7 272 55.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 9.1e-54 214.9 292 44.5
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 1.2e-53 214.5 420 41.4
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.5e-53 214.2 293 47.8
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 2.0e-53 213.8 339 47.2
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-53 213.4 339 44.0
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 5.9e-53 212.2 241 57.3
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 7.7e-53 211.8 334 46.7
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.0e-52 211.5 322 48.8
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.5e-52 208.4 300 45.0
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 5.5e-51 205.7 283 46.6
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.4e-49 201.1 292 43.8
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 7.4e-48 195.3 330 44.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 8.2e-47 191.8 344 41.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.1e-46 191.4 294 40.8
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 5.9e-45 185.7 340 37.1
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.2e-44 183.7 330 37.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.8e-44 183.0 251 49.4
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.2e-43 178.7 300 42.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.2e-42 177.9 295 38.0
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 3.6e-42 176.4 333 38.4
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.2e-40 171.4 291 42.6
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 3.3e-40 169.9 294 43.2
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 3.7e-39 166.4 297 36.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.7e-37 160.2 287 38.7
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-36 157.9 294 36.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.8e-30 137.5 190 43.2
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.5e-29 133.3 115 62.6
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.6e-26 123.2 241 37.8
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.3e-25 120.6 290 31.7
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.2e-24 118.2 340 32.6
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 2.2e-23 114.0 83 72.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.8e-22 110.9 283 37.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.1e-22 110.2 183 41.5
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.7e-21 107.1 92 58.7
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.8e-20 103.2 121 50.4
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.6e-20 102.4 263 31.2
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.9e-19 100.9 193 41.5
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 9.8e-16 88.6 104 52.9
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.4e-15 85.9 95 58.9
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.1e-14 85.1 95 48.4
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 2.4e-14 84.0 89 49.4
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.2e-13 81.6 117 43.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 7.8e-13 79.0 78 55.1
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 3.3e-11 73.6 80 50.0
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 9.5e-11 72.0 113 40.7
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 9.5e-11 72.0 322 26.4
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 1.6e-10 71.2 88 47.7
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.0e-09 68.6 110 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 2.9e-07 60.5 384 25.5


User provided reference genes

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