Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 8.8e-161 570.5 339 100.0
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 5.6e-107 391.7 339 69.9
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.1e-57 228.0 408 44.6
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 5.3e-57 225.7 354 53.7
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 6.1e-53 212.2 340 48.5
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 2.6e-51 206.8 341 45.5
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 1.7e-50 204.1 349 44.7
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 1.1e-49 201.4 349 45.0
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.8e-49 200.7 283 52.3
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 3.8e-47 193.0 296 45.6
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 3.7e-42 176.4 336 46.7
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 1.3e-26 124.8 288 38.9
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 2.9e-23 113.6 247 40.9
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 6.6e-23 112.5 315 37.5
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 7.2e-22 109.0 302 35.8
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 7.2e-22 109.0 295 39.7
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 1.2e-19 101.7 208 40.9
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 1.2e-19 101.7 357 31.9
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 2.6e-19 100.5 231 40.7
Psat5g203560 Pisum sativum HOM05D006637 ORTHO05D001736 5.7e-19 99.4 292 39.0
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.1e-17 95.1 204 39.2
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 3.2e-17 93.6 304 38.5
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 4.1e-17 93.2 274 33.6
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 7.0e-17 92.4 304 36.8
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 9.2e-17 92.0 289 34.9
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 1.0e-15 88.6 168 40.5
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.0e-15 88.6 210 37.6
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.3e-15 88.2 203 40.4
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 2.3e-15 87.4 139 43.2
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.3e-15 87.4 168 40.5
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 3.9e-15 86.7 335 31.6
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 2.5e-14 84.0 204 37.7
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 2.5e-14 84.0 187 37.4
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 5.6e-14 82.8 288 34.7
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 7.3e-14 82.4 280 30.4
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 7.3e-14 82.4 280 30.4
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 9.5e-14 82.0 199 40.7
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 2.8e-13 80.5 207 35.3
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.8e-12 77.8 223 34.1
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 4.0e-12 76.6 248 31.5
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 4.0e-12 76.6 135 37.0
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 5.2e-12 76.3 212 36.8
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 8.9e-12 75.5 248 31.5
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.2e-11 75.1 238 32.4
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.0e-11 74.3 154 40.9
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 2.0e-11 74.3 321 32.4
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 2.6e-11 73.9 248 31.0
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 2.6e-11 73.9 127 38.6
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 4.4e-11 73.2 235 34.5
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 5.8e-11 72.8 183 39.9
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 7.5e-11 72.4 118 42.4
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 9.8e-11 72.0 228 34.6
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 1.3e-10 71.6 314 29.9
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 1.3e-10 71.6 177 33.9
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.3e-10 71.6 300 33.0
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 2.2e-10 70.9 190 33.7
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 2.2e-10 70.9 294 33.0
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 2.2e-10 70.9 254 28.3
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 2.9e-10 70.5 184 38.6
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 2.9e-10 70.5 184 38.6
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 2.9e-10 70.5 218 33.5
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 2.9e-10 70.5 281 29.9
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 3.7e-10 70.1 200 34.5
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 8.3e-10 68.9 206 35.0
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 8.3e-10 68.9 98 43.9
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 8.3e-10 68.9 193 34.7
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 8.3e-10 68.9 151 35.1
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 1.1e-09 68.6 253 30.4
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 1.1e-09 68.6 183 37.7
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 1.4e-09 68.2 180 35.0
Hund09916 Selenicereus undatus HOM05D006637 ORTHO05D001736 1.4e-09 68.2 96 50.0
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.4e-09 68.2 133 40.6
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 1.9e-09 67.8 334 29.0
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 1.9e-09 67.8 140 37.1
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 2.4e-09 67.4 101 43.6
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.4e-09 67.4 101 43.6
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 2.4e-09 67.4 218 32.1
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 2.4e-09 67.4 179 34.1
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 3.2e-09 67.0 243 29.2
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 3.2e-09 67.0 219 32.4
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 3.2e-09 67.0 80 53.8
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 3.2e-09 67.0 181 35.4
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 3.2e-09 67.0 191 33.5
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 4.1e-09 66.6 101 43.6
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 4.1e-09 66.6 198 33.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 5.4e-09 66.2 76 51.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 5.4e-09 66.2 76 51.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 5.4e-09 66.2 146 38.4
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.2e-08 65.1 182 34.1
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.2e-08 65.1 230 30.0
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 1.6e-08 64.7 242 31.4
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 1.6e-08 64.7 234 31.2
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 1.6e-08 64.7 226 31.9
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.6e-08 64.7 98 41.8
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.6e-08 64.7 117 37.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.0e-08 64.3 128 38.3
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 2.0e-08 64.3 110 40.0
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 2.7e-08 63.9 209 32.5
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 2.7e-08 63.9 133 38.3
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 3.5e-08 63.5 109 41.3
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.5e-08 63.5 121 40.5
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 3.5e-08 63.5 96 42.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 3.5e-08 63.5 102 45.1
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 4.6e-08 63.2 196 31.1
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 6.0e-08 62.8 212 32.5
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 6.0e-08 62.8 123 40.7
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 6.0e-08 62.8 91 47.3
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 6.0e-08 62.8 112 41.1
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 7.8e-08 62.4 116 39.7
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 1.0e-07 62.0 184 40.8
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.0e-07 62.0 187 30.5
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 1.0e-07 62.0 211 30.3
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 1.3e-07 61.6 248 30.6
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 1.3e-07 61.6 200 32.5
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 1.3e-07 61.6 111 42.3
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.7e-07 61.2 236 30.1
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 3.0e-07 60.5 236 33.1
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 3.0e-07 60.5 76 46.1
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 3.0e-07 60.5 173 31.8
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 3.0e-07 60.5 76 43.4
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 3.9e-07 60.1 138 36.2
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 3.9e-07 60.1 317 28.7
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 5.0e-07 59.7 107 37.4
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 5.0e-07 59.7 175 35.4
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 5.0e-07 59.7 173 33.5
VMungo1215G1514 Vigna mungo HOM05D014318 ORTHO05D001736 5.0e-07 59.7 130 37.7
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 6.6e-07 59.3 201 33.3
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 8.6e-07 58.9 214 31.8
CSS0036361 Camellia sinensis var. sinensis HOM05D006637 ORTHO05D001736 8.6e-07 58.9 207 31.9
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 8.6e-07 58.9 164 32.3
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 8.6e-07 58.9 187 32.1
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.1e-06 58.5 230 37.0
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 1.1e-06 58.5 208 32.7
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 1.1e-06 58.5 78 44.9
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 1.1e-06 58.5 158 34.2
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 1.5e-06 58.2 135 34.1
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 1.9e-06 57.8 250 32.0
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 1.9e-06 57.8 213 32.4
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 1.9e-06 57.8 176 29.0
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 2.5e-06 57.4 131 32.1
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 2.5e-06 57.4 229 30.1
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 2.5e-06 57.4 104 36.5
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.5e-06 57.4 213 33.8
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 2.5e-06 57.4 75 49.3
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 2.5e-06 57.4 192 32.3
ECA247G1160 Erigeron canadensis HOM05D036494 ORTHO05D001736 3.3e-06 57.0 87 42.5
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 3.3e-06 57.0 197 34.5
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 3.3e-06 57.0 172 33.1
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 4.3e-06 56.6 96 40.6
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 4.3e-06 56.6 202 30.7
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.3e-06 56.6 213 31.9
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 4.3e-06 56.6 255 32.5
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 4.3e-06 56.6 132 37.1
BcaB05g24564 Brassica carinata HOM05D006637 ORTHO05D001736 5.6e-06 56.2 69 52.2
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 5.6e-06 56.2 200 34.0
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 5.6e-06 56.2 192 33.3
Gohir.A12G161000 Gossypium hirsutum HOM05D039012 ORTHO05D001736 5.6e-06 56.2 135 33.3
Gorai.008G176900 Gossypium raimondii HOM05D039012 ORTHO05D001736 5.6e-06 56.2 109 38.5
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 5.6e-06 56.2 137 38.0
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 7.3e-06 55.8 282 29.1
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 7.3e-06 55.8 193 34.7
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 7.3e-06 55.8 334 26.9
Solyc03g115060.3 Solanum lycopersicum HOM05D006637 ORTHO05D001736 7.3e-06 55.8 126 34.9
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.3e-06 55.8 232 28.4
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 9.5e-06 55.5 190 28.9


User provided reference genes

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