Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 6.7e-137 490.7 255 100.0
Glyma.05G023400 Glycine max HOM05D002953 ORTHO05D003249 3.6e-114 415.2 255 86.7
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 5.8e-64 248.4 267 56.9
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 1.5e-59 233.8 265 53.6
Phvul.003G186800 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.2e-48 197.6 179 67.6
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 1.9e-46 190.3 271 48.7
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 2.3e-44 183.3 266 46.2
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 8.6e-44 181.4 266 45.5
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 1.5e-43 180.6 267 46.4
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 1.8e-33 147.1 210 45.7
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 9.3e-30 134.8 228 43.9
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 3.5e-29 132.9 224 44.2
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 2.5e-27 126.7 237 40.9
Glyma.04G164800 Glycine max HOM05D002953 ORTHO05D003249 2.8e-26 123.2 160 48.1
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 3.8e-23 112.8 231 38.1
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 2.4e-22 110.2 227 37.4
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 5.4e-22 109.0 237 38.4
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 9.3e-22 108.2 289 33.6
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 1.1e-19 101.3 265 34.7
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 1.5e-19 100.9 272 34.2
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 5.6e-19 99.0 225 34.2
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.4e-17 94.4 288 32.3
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 3.1e-17 93.2 238 35.7
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 6.9e-17 92.0 279 29.0
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 3.4e-16 89.7 246 28.5
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 4.5e-16 89.4 223 33.6
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 4.5e-16 89.4 236 33.1
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.0e-15 88.2 243 33.3
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 1.3e-15 87.8 248 32.7
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 2.2e-15 87.0 227 34.8
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 6.5e-15 85.5 285 30.9
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 6.5e-15 85.5 287 29.3
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 8.4e-15 85.1 295 30.5
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 3.2e-14 83.2 226 32.7
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 4.2e-14 82.8 235 34.0
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 7.1e-14 82.0 227 32.6
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 2.1e-13 80.5 278 32.0
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 2.7e-13 80.1 266 32.3
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 4.6e-13 79.3 254 31.1
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 4.6e-13 79.3 213 36.6
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 6.0e-13 79.0 231 30.7
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 6.0e-13 79.0 228 28.9
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 6.0e-13 79.0 227 31.7
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 7.9e-13 78.6 273 29.7
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 1.0e-12 78.2 221 31.7
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 1.3e-12 77.8 233 33.9
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.3e-12 77.8 329 30.4
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 2.3e-12 77.0 275 29.5
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 3.0e-12 76.6 290 30.3
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 3.9e-12 76.3 224 31.7
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 5.1e-12 75.9 231 30.7
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 5.1e-12 75.9 231 30.7
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 5.1e-12 75.9 221 32.1
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 6.7e-12 75.5 239 30.5
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 6.7e-12 75.5 218 31.7
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 1.1e-11 74.7 268 28.0
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.9e-11 73.9 282 28.7
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 2.5e-11 73.6 236 29.2
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 2.5e-11 73.6 225 30.7
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 3.3e-11 73.2 134 36.6
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 2.1e-10 70.5 225 27.6
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 2.8e-10 70.1 256 30.9
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 3.7e-10 69.7 273 28.6
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 4.8e-10 69.3 276 30.4
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 1.4e-09 67.8 253 30.8
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 1.8e-09 67.4 273 29.3
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 3.1e-09 66.6 303 28.4
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 5.3e-09 65.9 284 28.5
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 5.3e-09 65.9 286 26.2
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 1.2e-08 64.7 276 28.6
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.2e-08 64.7 208 32.7
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.5e-08 64.3 221 31.7
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 2.6e-08 63.5 242 28.5
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 2.6e-08 63.5 221 30.3
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 2.6e-08 63.5 119 37.0
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 2.6e-08 63.5 218 28.4
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 3.4e-08 63.2 151 31.8
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 3.4e-08 63.2 328 28.7
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 3.4e-08 63.2 308 26.6
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 7.6e-08 62.0 284 25.4
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 2.9e-07 60.1 224 29.5
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 3.8e-07 59.7 220 29.5
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 6.5e-07 58.9 272 28.3
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 8.4e-07 58.5 265 28.7
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 8.4e-07 58.5 165 30.9
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 8.4e-07 58.5 212 30.2
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 1.9e-06 57.4 265 28.3
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 1.9e-06 57.4 265 28.3
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 1.9e-06 57.4 259 27.4
HanXRQChr12g0375351 Helianthus annuus HOM05D002953 ORTHO05D003249 2.5e-06 57.0 318 26.1
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 4.2e-06 56.2 289 26.0
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 5.5e-06 55.8 315 26.7


User provided reference genes

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