Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 2.2e-45 185.3 95 100.0
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 3.6e-35 151.4 85 81.2
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 6.1e-35 150.6 85 82.4
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 1.5e-33 146.0 84 81.0
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 1.5e-33 146.0 88 80.7
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 1.7e-32 142.5 85 78.8
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 3.7e-32 141.4 84 79.8
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 3.7e-32 141.4 84 79.8
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 6.3e-32 140.6 85 76.5
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 1.8e-31 139.0 85 77.6
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 2.4e-31 138.7 73 89.0
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 2.4e-31 138.7 85 74.1
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 2.4e-31 138.7 85 76.5
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 3.1e-31 138.3 84 78.6
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 4.1e-31 137.9 85 74.1
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 7.0e-31 137.1 84 76.2
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 7.0e-31 137.1 85 74.1
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 9.1e-31 136.7 85 74.1
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 9.1e-31 136.7 85 74.1
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 9.1e-31 136.7 84 76.2
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 9.1e-31 136.7 85 74.1
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 1.6e-30 136.0 85 74.1
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.0e-30 135.6 85 71.8
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 2.0e-30 135.6 85 72.9
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 2.6e-30 135.2 86 72.1
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 3.5e-30 134.8 85 72.9
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 3.5e-30 134.8 85 72.9
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 3.5e-30 134.8 85 72.9
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 3.5e-30 134.8 85 72.9
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 3.5e-30 134.8 85 72.9
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 3.5e-30 134.8 85 74.1
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 4.5e-30 134.4 84 75.0
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 7.7e-30 133.7 85 71.8
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 7.7e-30 133.7 84 73.8
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 1.0e-29 133.3 85 72.9
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 1.3e-29 132.9 85 70.6
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 1.3e-29 132.9 85 70.6
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 1.3e-29 132.9 85 70.6
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 1.3e-29 132.9 87 73.6
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 2.2e-29 132.1 96 67.7
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 2.2e-29 132.1 84 75.0
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 2.9e-29 131.7 85 70.6
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 2.9e-29 131.7 86 73.3
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.9e-29 131.7 85 72.9
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 5.0e-29 131.0 85 72.9
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 6.5e-29 130.6 85 71.8
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 6.5e-29 130.6 85 71.8
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 6.5e-29 130.6 85 70.6
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 1.1e-28 129.8 85 69.4
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 1.5e-28 129.4 85 68.2
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 1.9e-28 129.0 73 83.6
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 1.9e-28 129.0 84 67.9
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.5e-28 128.6 85 70.6
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.5e-28 128.6 82 74.4
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 2.5e-28 128.6 84 71.4
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 3.2e-28 128.3 85 68.2
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 4.2e-28 127.9 84 70.2
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 4.2e-28 127.9 85 68.2
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 5.5e-28 127.5 85 70.6
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 7.2e-28 127.1 86 70.9
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 2.1e-27 125.6 73 80.8
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 2.1e-27 125.6 85 69.4
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 2.1e-27 125.6 85 67.1
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 2.7e-27 125.2 85 67.1
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 4.7e-27 124.4 85 67.1
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 4.7e-27 124.4 85 67.1
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 6.1e-27 124.0 86 69.8
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 8.0e-27 123.6 85 65.9
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 8.0e-27 123.6 85 65.9
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 8.0e-27 123.6 85 65.9
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 8.0e-27 123.6 85 65.9
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 1.4e-26 122.9 81 71.6
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.4e-26 122.9 85 65.9
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.4e-26 122.9 107 57.9
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.8e-26 122.5 81 72.8
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 8.8e-26 120.2 73 75.3
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 1.5e-25 119.4 73 76.7
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 1.5e-25 119.4 84 64.3
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 1.5e-25 119.4 73 78.1
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 2.6e-25 118.6 73 78.1
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 2.6e-25 118.6 73 78.1
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 4.4e-25 117.9 73 76.7
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 4.4e-25 117.9 79 67.1
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 4.4e-25 117.9 79 68.4
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 4.4e-25 117.9 73 76.7
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 5.7e-25 117.5 73 78.1
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 5.7e-25 117.5 73 78.1
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 5.7e-25 117.5 101 59.4
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 5.7e-25 117.5 73 76.7
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 7.5e-25 117.1 72 77.8
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 2.2e-24 115.5 73 74.0
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 2.2e-24 115.5 73 74.0
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 4.8e-24 114.4 73 75.3
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 6.3e-24 114.0 77 68.8
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 6.3e-24 114.0 72 76.4
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 8.2e-24 113.6 72 73.6
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 2.4e-23 112.1 73 75.3
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 4.1e-23 111.3 88 63.6
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 4.1e-23 111.3 73 72.6
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 5.3e-23 110.9 72 72.2
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 9.1e-23 110.2 73 71.2
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.7e-22 108.6 77 68.8
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 2.7e-22 108.6 73 71.2
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 4.5e-22 107.8 73 71.2
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 5.9e-22 107.5 73 69.9
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 1.3e-21 106.3 73 68.5
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 8.5e-21 103.6 73 65.8
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 2.5e-20 102.1 72 68.1
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 1.6e-19 99.4 73 67.1
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 4.7e-19 97.8 79 65.8
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.4e-18 96.3 75 60.0
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.8e-18 95.9 82 63.4
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 9.8e-17 90.1 79 57.0
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 2.2e-16 89.0 72 61.1
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 2.8e-16 88.6 66 62.1
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 3.7e-16 88.2 63 63.5
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.3e-16 87.4 61 68.9
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 8.3e-16 87.0 73 60.3
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 1.1e-15 86.7 60 61.7
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 2.9e-13 78.6 79 50.6
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 5.0e-13 77.8 79 48.1
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 1.5e-12 76.3 41 85.4
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 1.9e-12 75.9 41 82.9
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.6e-11 71.6 52 67.3
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 2.6e-09 65.5 44 72.7
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 5.7e-09 64.3 41 70.7
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 4.9e-08 61.2 57 50.9
CiPaw.16G114400 Carya illinoinensis HOM05D006119 ORTHO05D007641 2.0e-06 55.8 38 68.4
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 4.5e-06 54.7 29 82.8


User provided reference genes

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