Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 1.3e-130 469.9 276 100.0
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.6e-115 419.9 277 89.9
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 2.4e-108 396.0 280 83.9
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 6.8e-103 377.9 280 76.1
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 7.5e-94 347.8 278 72.3
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 3.7e-93 345.5 278 71.6
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.9e-85 319.3 265 67.2
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 6.4e-85 318.2 279 66.3
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.2e-84 315.8 278 65.5
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 9.2e-84 314.3 282 72.7
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 8.7e-82 307.8 273 64.1
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.9e-81 306.6 279 67.7
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 1.6e-80 303.5 277 64.3
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.4e-79 300.4 190 81.1
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 4.0e-79 298.9 277 63.9
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 1.2e-78 297.4 272 63.2
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 1.2e-78 297.4 280 60.7
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 2.6e-78 296.2 279 63.8
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.4e-78 295.8 278 63.3
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.4e-78 295.8 278 63.3
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 7.6e-78 294.7 279 62.7
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 7.6e-78 294.7 278 62.9
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.3e-77 293.9 251 63.7
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 2.2e-77 293.1 279 62.0
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.9e-77 292.0 255 66.3
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.4e-76 290.4 278 61.9
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.9e-76 290.0 284 68.0
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 2.4e-76 289.7 278 69.1
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 4.2e-76 288.9 268 63.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 5.4e-76 288.5 278 61.9
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 5.4e-76 288.5 265 61.1
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 7.1e-76 288.1 270 62.2
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 1.2e-75 287.3 282 63.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 2.1e-75 286.6 261 63.6
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 3.9e-74 282.3 273 63.4
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.9e-74 282.3 280 67.9
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 5.1e-74 282.0 191 77.0
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 8.7e-74 281.2 264 62.1
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.6e-72 275.8 281 61.9
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 4.8e-72 275.4 281 58.7
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 4.8e-72 275.4 190 75.8
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 6.2e-72 275.0 261 61.7
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 6.2e-72 275.0 261 61.7
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 1.8e-71 273.5 283 62.9
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 2.4e-71 273.1 285 61.1
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 4.0e-71 272.3 252 61.9
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 5.3e-71 271.9 275 62.2
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 3.4e-70 269.2 192 71.4
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 5.8e-70 268.5 273 60.1
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.7e-69 266.9 187 71.7
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.7e-69 266.9 277 59.2
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.9e-68 263.5 193 72.5
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 2.4e-68 263.1 192 72.4
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 2.4e-68 263.1 278 62.9
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 3.2e-68 262.7 187 73.3
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 5.4e-68 261.9 271 60.9
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 7.1e-68 261.5 191 71.2
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 9.3e-68 261.2 185 74.6
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 9.3e-68 261.2 275 62.2
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.2e-67 260.8 275 58.9
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 1.2e-67 260.8 195 71.3
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 2.7e-67 259.6 290 56.2
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 2.7e-67 259.6 290 56.2
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 2.7e-67 259.6 290 56.2
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 2.7e-67 259.6 192 70.8
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 2.7e-67 259.6 284 53.9
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 4.6e-67 258.8 276 56.9
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 6.0e-67 258.5 270 56.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 6.0e-67 258.5 264 55.3
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 6.0e-67 258.5 191 74.9
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.3e-66 256.5 184 71.2
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 8.7e-66 254.6 312 53.2
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 1.1e-65 254.2 194 69.1
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 1.1e-65 254.2 194 69.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.9e-65 253.4 274 58.0
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 5.6e-65 251.9 192 69.3
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 7.4e-65 251.5 271 57.6
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 7.4e-65 251.5 209 65.1
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.3e-64 250.8 190 66.8
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.6e-64 250.4 188 67.6
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.6e-64 250.4 283 58.0
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 4.8e-64 248.8 268 56.7
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 8.1e-64 248.1 262 56.5
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.1e-63 247.7 277 54.5
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.8e-63 246.9 272 57.4
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 2.4e-63 246.5 195 66.7
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 2.4e-63 246.5 272 55.1
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 3.1e-63 246.1 186 67.7
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 3.1e-63 246.1 272 55.9
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 3.1e-63 246.1 272 56.2
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 3.1e-63 246.1 196 67.9
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 4.0e-63 245.7 278 64.0
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 5.3e-63 245.4 272 57.0
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-63 245.4 276 61.6
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-63 245.4 276 61.6
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 5.3e-63 245.4 152 82.9
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 9.0e-63 244.6 191 66.5
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 3.4e-62 242.7 198 67.7
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 4.5e-62 242.3 170 74.1
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 5.8e-62 241.9 277 50.2
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 7.6e-62 241.5 277 50.2
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 9.9e-62 241.1 271 59.0
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 1.3e-61 240.7 201 66.2
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.7e-61 240.4 294 52.0
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 1.1e-60 237.7 188 67.6
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 5.5e-60 235.3 253 56.1
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 2.1e-59 233.4 235 60.0
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 1.3e-58 230.7 267 54.3
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 5.1e-58 228.8 187 66.3
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 8.7e-58 228.0 169 71.0
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 8.7e-58 228.0 198 61.1
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.5e-57 227.3 194 61.9
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 3.3e-57 226.1 270 52.2
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 9.6e-57 224.6 275 53.1
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 3.7e-56 222.6 265 52.5
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 4.0e-55 219.2 185 64.3
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 1.2e-54 217.6 191 62.8
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 8.4e-53 211.5 139 77.7
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 3.0e-50 203.0 188 55.3
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.5e-49 199.9 166 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.8e-48 195.7 167 59.3
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 6.3e-48 195.3 264 48.1
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 3.1e-47 193.0 181 57.5
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.1e-47 192.6 261 48.3
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 5.9e-46 188.7 277 47.7
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.1e-44 184.5 163 60.1
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.0e-42 177.9 176 52.3
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.3e-40 171.0 107 79.4
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 6.3e-40 168.7 194 45.4
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 1.8e-39 167.2 105 80.0
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.4e-38 162.9 117 69.2
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 1.4e-36 157.5 184 46.7
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.7e-29 134.0 198 50.5
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 1.1e-28 131.3 100 71.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 2.5e-28 130.2 180 40.0
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 3.2e-28 129.8 132 51.5
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 2.6e-25 120.2 67 88.1
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 7.4e-25 118.6 95 64.2
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 7.7e-22 108.6 168 50.6
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.7e-19 100.1 159 34.0
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.0e-18 98.2 131 49.6
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 6.7e-18 95.5 82 58.5
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.2e-16 90.5 143 49.0
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 2.0e-14 84.0 144 31.2
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 7.7e-14 82.0 60 70.0
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 1.0e-13 81.6 59 67.8
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 8.5e-13 78.6 125 48.8
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 4.4e-09 66.2 183 30.1
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 9.8e-09 65.1 183 29.5
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.3e-08 64.7 188 29.3
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 2.8e-08 63.5 65 53.8
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 2.8e-08 63.5 65 53.8
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.8e-08 63.5 130 56.2
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 3.7e-08 63.2 143 32.2
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 4.8e-08 62.8 193 29.0
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 6.3e-08 62.4 45 73.3
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 6.3e-08 62.4 182 26.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 8.3e-08 62.0 173 26.0
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 8.3e-08 62.0 124 32.3
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.1e-07 61.6 178 26.4
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 2.4e-07 60.5 117 32.5
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 4.1e-07 59.7 207 29.0
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 4.1e-07 59.7 166 30.1
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 5.4e-07 59.3 187 27.8
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 5.4e-07 59.3 44 65.9
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 7.0e-07 58.9 189 27.0
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 7.0e-07 58.9 59 55.9
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 7.0e-07 58.9 192 28.1
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 9.1e-07 58.5 192 27.1
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.1e-07 58.5 162 27.2
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.2e-06 58.2 192 27.1
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.2e-06 58.2 160 26.9
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 2.0e-06 57.4 147 29.3
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.0e-06 57.4 96 33.3
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 2.7e-06 57.0 192 26.6
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.7e-06 57.0 192 26.6
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.7e-06 57.0 192 26.6
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 2.7e-06 57.0 192 26.6
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.7e-06 57.0 192 26.6
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.7e-06 57.0 147 24.5
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 3.5e-06 56.6 173 24.9
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 3.5e-06 56.6 187 25.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 3.5e-06 56.6 114 31.6
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 5.9e-06 55.8 158 25.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 5.9e-06 55.8 186 26.9
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 5.9e-06 55.8 64 48.4
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.7e-06 55.5 167 24.6


User provided reference genes

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