Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.3e-67 258.8 135 100.0
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.6e-55 218.8 135 88.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.6e-51 204.1 136 80.1
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.9e-50 202.6 130 84.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.9e-38 162.2 137 69.3
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.5e-34 149.8 132 63.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 8.1e-33 144.1 125 64.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 6.9e-32 141.0 130 63.8
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.2e-29 131.7 133 59.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 7.1e-29 131.0 132 59.8
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.0e-28 127.9 129 57.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.1e-25 119.4 124 54.8
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.4e-24 115.9 125 61.6
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.3e-24 114.8 126 51.6
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 6.9e-24 114.4 126 50.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.2e-23 113.6 118 55.1
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.2e-23 113.6 124 57.3
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.6e-23 112.5 123 56.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 2.6e-23 112.5 128 51.6
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.6e-23 112.5 125 50.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.5e-23 111.7 123 55.3
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 7.6e-23 110.9 125 56.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 7.6e-23 110.9 125 56.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 9.9e-23 110.5 124 54.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.7e-22 109.8 127 52.0
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.2e-22 109.4 128 55.5
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.8e-22 108.6 126 50.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.8e-22 108.6 126 50.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.9e-21 106.3 111 55.0
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.4e-21 105.9 125 52.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.2e-21 105.5 124 54.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 5.4e-21 104.8 128 53.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.3e-21 104.0 123 51.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 9.3e-21 104.0 127 51.2
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-20 103.6 129 53.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.1e-20 102.8 117 52.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.1e-20 102.8 129 49.6
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.1e-20 102.8 118 53.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.7e-20 102.4 118 50.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.7e-20 102.4 127 50.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.5e-20 102.1 128 49.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.5e-20 102.1 128 49.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.6e-20 101.7 118 55.9
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.9e-20 100.9 128 49.2
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 128 49.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.8e-19 99.8 127 48.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-19 99.8 124 52.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.8e-19 99.8 124 50.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 5.1e-19 98.2 118 50.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 6.7e-19 97.8 118 47.5
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-18 97.1 128 48.4
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.1e-18 97.1 122 49.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.1e-18 97.1 124 48.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.5e-18 96.7 123 47.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.5e-18 96.7 117 51.3
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.9e-18 96.3 118 50.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.5e-18 95.9 122 50.8
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.3e-18 95.5 128 47.7
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-18 95.1 124 47.6
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 5.6e-18 94.7 127 48.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.4e-18 94.4 121 51.2
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 9.6e-18 94.0 118 44.9
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 9.6e-18 94.0 86 57.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-17 93.6 100 54.0
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.1e-17 92.8 124 50.0
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.8e-17 92.4 111 51.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.6e-17 92.0 118 50.0
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 4.8e-17 91.7 117 44.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 8.1e-17 90.9 125 47.2
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.4e-16 90.1 116 46.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.4e-16 90.1 136 44.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-16 89.7 123 43.9
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.1e-16 89.0 100 53.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.1e-16 89.0 134 47.8
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.0e-16 88.6 121 45.5
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.0e-16 88.6 111 50.5
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 9.0e-16 87.4 119 43.7
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-15 87.0 129 46.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-15 87.0 109 47.7
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-15 87.0 118 47.5
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.2e-15 87.0 122 45.9
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-15 86.7 117 47.9
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.0e-15 86.3 128 46.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.0e-15 86.3 130 48.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.6e-15 85.9 141 42.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.6e-15 85.9 117 44.4
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.6e-15 85.9 117 44.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 5.8e-15 84.7 132 47.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 7.6e-15 84.3 109 48.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.6e-15 84.3 121 44.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.9e-15 84.0 123 45.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 9.9e-15 84.0 119 46.2
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 9.9e-15 84.0 115 45.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.3e-14 83.6 123 41.5
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.7e-14 83.2 158 39.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.7e-14 83.2 95 49.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.2e-14 82.8 146 41.1
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.8e-14 82.0 137 38.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 4.9e-14 81.6 121 45.5
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 4.9e-14 81.6 107 43.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.9e-14 81.6 132 46.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 4.9e-14 81.6 126 46.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 6.4e-14 81.3 109 48.6
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 8.4e-14 80.9 121 48.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.1e-13 80.5 125 44.0
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.1e-13 80.5 124 44.4
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 137 40.9
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.4e-13 80.1 132 46.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.9e-13 79.7 120 47.5
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.4e-13 79.3 131 44.3
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.4e-13 79.3 120 43.3
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.2e-13 79.0 131 45.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.2e-13 78.6 132 46.2
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 4.2e-13 78.6 132 46.2
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.2e-13 78.6 131 45.8
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.2e-13 78.6 108 46.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 7.1e-13 77.8 131 45.8
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 7.1e-13 77.8 131 45.8
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 7.1e-13 77.8 124 41.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 7.1e-13 77.8 120 41.7
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 9.3e-13 77.4 111 45.9
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 111 42.3
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-12 76.6 138 38.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.1e-12 76.3 139 36.7
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.1e-12 76.3 124 41.9
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.7e-12 75.9 78 52.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 3.5e-12 75.5 122 45.1
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 6.0e-12 74.7 118 47.5
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 7.9e-12 74.3 136 41.9
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-11 73.2 122 42.6
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-11 73.2 101 48.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.3e-11 72.8 130 43.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.0e-11 72.4 128 45.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.0e-11 72.4 86 45.3
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.9e-11 72.0 128 43.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 8.7e-11 70.9 85 48.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 8.7e-11 70.9 85 48.2
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-10 70.5 118 44.1
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.1e-10 70.5 118 44.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.5e-10 69.3 128 42.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.5e-10 69.3 117 41.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 7.4e-10 67.8 173 32.4
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.6e-10 67.4 103 42.7
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 9.6e-10 67.4 110 44.5
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.3e-09 67.0 139 34.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.3e-09 67.0 127 38.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.1e-09 66.2 123 39.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.7e-09 65.5 121 43.8
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 8.2e-09 64.3 129 38.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 8.2e-09 64.3 114 42.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.0e-08 62.0 110 42.7
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 5.3e-08 61.6 131 37.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.2e-07 60.5 153 36.6
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.4e-07 58.9 38 71.1
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 4.5e-07 58.5 125 40.0
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.6e-07 57.8 126 38.1
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.0e-06 57.4 38 68.4
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 2.9e-06 55.8 109 38.5


User provided reference genes

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