Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 3.1e-177 625.2 348 100.0
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 3.2e-134 482.3 350 82.6
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 3.0e-116 422.5 346 74.9
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 2.4e-105 386.3 389 63.8
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 5.0e-95 352.1 363 64.2
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 2.4e-89 333.2 393 56.7
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 4.0e-76 289.3 365 54.8
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.0e-75 287.0 365 53.2
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 2.0e-75 287.0 367 54.0
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 6.4e-66 255.4 407 50.6
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 7.9e-56 221.9 352 46.6
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 3.0e-55 219.9 370 43.2
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 3.9e-55 219.5 431 42.5
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 8.7e-55 218.4 417 41.2
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 5.6e-54 215.7 370 42.7
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 8.1e-53 211.8 413 42.6
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 5.3e-52 209.1 456 38.2
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 2.0e-51 207.2 370 45.1
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 2.0e-51 207.2 348 42.5
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 7.6e-51 205.3 404 40.3
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.1e-49 201.4 405 39.0
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 1.4e-49 201.1 321 47.0
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 1.9e-49 200.7 403 39.5
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 4.2e-49 199.5 461 37.5
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.2e-48 198.0 449 39.2
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 3.5e-48 196.4 449 38.3
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 4.6e-48 196.1 438 40.2
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 7.9e-48 195.3 366 41.3
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 8.7e-47 191.8 401 40.6
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 2.5e-46 190.3 438 37.4
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 7.4e-46 188.7 490 38.4
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 1.6e-45 187.6 463 38.2
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 2.8e-45 186.8 426 38.5
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 6.9e-44 182.2 218 51.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 9.0e-44 181.8 437 36.4
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 1.2e-43 181.4 424 37.0
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 1.5e-43 181.0 559 32.0
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.5e-43 181.0 391 39.1
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 2.6e-43 180.3 395 40.0
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 3.4e-43 179.9 536 33.4
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 2.2e-42 177.2 398 39.4
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 6.5e-42 175.6 476 33.8
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 8.5e-42 175.3 399 38.1
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.1e-41 174.9 157 65.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 1.4e-41 174.5 263 51.0
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 1.4e-41 174.5 441 37.9
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 1.4e-41 174.5 381 37.5
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 5.5e-41 172.6 481 35.3
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 7.2e-41 172.2 370 41.6
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 2.1e-40 170.6 349 38.4
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 2.1e-40 170.6 450 36.9
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 1.0e-39 168.3 365 42.5
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 6.7e-39 165.6 390 38.7
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 1.1e-38 164.9 352 38.9
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 1.1e-38 164.9 411 37.0
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.9e-38 164.1 421 34.4
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 1.9e-38 164.1 359 39.0
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 2.5e-38 163.7 352 34.9
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 2.8e-37 160.2 372 37.9
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 4.8e-37 159.5 345 36.5
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 8.2e-37 158.7 369 36.0
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 8.2e-37 158.7 374 37.4
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 8.2e-37 158.7 384 36.2
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 1.4e-36 157.9 287 42.2
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 6.9e-36 155.6 376 37.2
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 6.9e-36 155.6 379 37.7
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.5e-35 154.5 416 34.9
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.6e-35 153.7 357 38.1
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 7.7e-35 152.1 540 31.5
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 1.3e-34 151.4 376 35.9
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.3e-34 151.4 376 34.6
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 1.3e-34 151.4 340 39.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 2.2e-34 150.6 355 38.0
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 2.9e-34 150.2 437 33.0
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 5.5e-33 146.0 239 47.3
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 5.5e-33 146.0 349 35.5
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 5.5e-33 146.0 349 35.5
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 2.7e-32 143.7 348 35.9
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 2.7e-32 143.7 258 43.8
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 3.6e-32 143.3 452 33.4
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 7.9e-32 142.1 362 37.0
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.4e-31 141.4 363 39.4
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 1.8e-31 141.0 269 42.0
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 2.3e-31 140.6 362 37.0
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 3.9e-31 139.8 255 44.7
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 6.7e-31 139.0 379 36.4
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 8.8e-31 138.7 359 35.4
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 8.8e-31 138.7 89 75.3
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 1.1e-30 138.3 262 43.5
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 1.5e-30 137.9 307 40.7
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 2.6e-30 137.1 350 34.6
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 2.6e-30 137.1 383 35.0
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.7e-29 133.3 368 33.2
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 6.3e-29 132.5 347 34.0
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 8.2e-29 132.1 345 35.7
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 8.2e-29 132.1 345 35.7
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 8.2e-29 132.1 345 35.7
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 3.1e-28 130.2 253 41.9
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 5.3e-28 129.4 384 34.4
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 6.9e-28 129.0 261 41.8
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.5e-27 127.9 165 50.3
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.7e-26 124.4 448 29.7
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 2.2e-26 124.0 355 34.1
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 1.4e-25 121.3 344 34.3
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 2.5e-25 120.6 455 30.8
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 9.4e-25 118.6 163 47.2
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 9.4e-25 118.6 163 47.2
MD13G1240600 Malus domestica HOM05D005890 ORTHO05D006717 2.1e-24 117.5 352 34.7
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.4e-23 114.8 527 29.0
Haze_22044 Corylus avellana HOM05D005890 ORTHO05D006717 3.0e-23 113.6 228 43.9
FvH4_4g06950 Fragaria vesca HOM05D005890 ORTHO05D006717 1.5e-22 111.3 292 33.6
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 2.6e-22 110.5 164 42.7
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 4.8e-21 106.3 237 39.7
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 6.3e-21 105.9 356 32.3
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 8.2e-21 105.5 337 33.8
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.1e-20 105.1 62 79.0
CSS0049604 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 5.3e-20 102.8 215 38.1
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 7.0e-20 102.4 478 29.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 7.0e-20 102.4 90 58.9
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 1.6e-19 101.3 343 32.1
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 1.6e-19 101.3 196 39.3
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-18 97.4 155 43.2
Gohir.D04G007200 Gossypium hirsutum HOM05D005890 ORTHO05D006717 3.6e-16 90.1 339 34.8
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 2.3e-15 87.4 408 28.9
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 4.8e-13 79.7 337 30.3
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 1.0e-10 72.0 55 63.6
VMungo1309G1022 Vigna mungo HOM05D028815 ORTHO05D006717 1.9e-09 67.8 47 80.9
VMungo0720G0706 Vigna mungo HOM05D028815 ORTHO05D006717 2.5e-09 67.4 53 73.6
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.6e-08 64.7 35 82.9
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.6e-08 64.7 35 82.9
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 4.7e-08 63.2 83 48.2
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 8.0e-08 62.4 99 45.5


User provided reference genes

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