Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 1.7e-63 245.7 118 100.0
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 5.6e-38 161.0 121 69.4
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 1.8e-36 156.0 111 71.2
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.7e-24 115.5 85 65.9
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 2.3e-23 112.5 113 52.2
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 5.8e-19 97.8 76 59.2
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 3.2e-17 92.0 113 49.6
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 4.2e-17 91.7 118 42.4
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 2.1e-16 89.4 105 51.4
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 1.8e-15 86.3 114 41.2
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 1.5e-14 83.2 101 49.5
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 9.6e-14 80.5 110 44.5
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 3.7e-13 78.6 110 42.7
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 9.0e-12 73.9 108 41.7
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 1.2e-11 73.6 111 42.3
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 5.8e-11 71.2 110 42.7
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 5.8e-11 71.2 93 46.2
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 5.8e-11 71.2 93 46.2
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 9.9e-11 70.5 109 42.2
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 9.9e-11 70.5 72 50.0
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.7e-10 69.7 113 39.8
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 1.9e-09 66.2 91 38.5
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 3.2e-09 65.5 70 52.9
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 3.2e-09 65.5 115 37.4
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 7.1e-09 64.3 68 50.0
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.6e-08 63.2 68 48.5
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 2.7e-08 62.4 68 48.5
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 4.6e-08 61.6 115 34.8
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 6.0e-08 61.2 116 36.2
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 7.9e-08 60.8 69 49.3
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 1.3e-07 60.1 74 44.6
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.8e-07 59.7 116 34.5
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 1.8e-07 59.7 116 37.1
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 2.3e-07 59.3 116 31.9
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 3.0e-07 58.9 114 36.8
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 3.9e-07 58.5 113 36.3
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 5.1e-07 58.2 113 33.6
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 6.7e-07 57.8 74 44.6
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 8.7e-07 57.4 116 34.5
Hma1.2p1_0235F.1_g098980 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 8.7e-07 57.4 87 40.2
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-06 57.0 74 40.5
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.1e-06 57.0 74 40.5
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.5e-06 56.6 113 34.5
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-06 56.6 116 32.8
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-06 56.6 116 32.8
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 2.5e-06 55.8 101 36.6
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 3.3e-06 55.5 119 32.8
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 3.3e-06 55.5 113 35.4
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 3.3e-06 55.5 115 30.4
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 3.3e-06 55.5 113 36.3
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 4.3e-06 55.1 113 31.9
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 4.3e-06 55.1 113 31.9
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 4.3e-06 55.1 122 32.8
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 4.3e-06 55.1 110 38.2
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 5.6e-06 54.7 115 31.3
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 7.4e-06 54.3 108 35.2
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 7.4e-06 54.3 113 34.5
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 7.4e-06 54.3 113 31.9
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 9.6e-06 53.9 115 33.0
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 9.6e-06 53.9 113 34.5
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 9.6e-06 53.9 113 34.5
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 9.6e-06 53.9 116 31.0
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 9.6e-06 53.9 113 35.4
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 9.6e-06 53.9 115 33.9
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 9.6e-06 53.9 115 29.6


User provided reference genes

Program Settings