Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G055400 Glycine max HOM05D000579 ORTHO05D000741 2.3e-66 255.4 127 100.0
Glyma.05G177400 Glycine max HOM05D000579 ORTHO05D000741 4.3e-12 75.1 47 74.5
Glyma.08G134500 Glycine max HOM05D000579 ORTHO05D000741 1.7e-11 73.2 47 72.3
VMungo0251G2686 Vigna mungo HOM05D000579 ORTHO05D000741 1.5e-09 66.6 45 66.7
Lalb_Chr07g0185221 Lupinus albus HOM05D000579 ORTHO05D000741 2.6e-09 65.9 39 71.8
Dinv13203 Davidia involucrata HOM05D000579 ORTHO05D000741 3.4e-09 65.5 41 70.7
Phvul.002G257100 Phaseolus vulgaris HOM05D000579 ORTHO05D000741 5.9e-09 64.7 47 61.7
Psat7g055360 Pisum sativum HOM05D000579 ORTHO05D000741 5.9e-09 64.7 45 60.0
Thecc.01G099100 Theobroma cacao HOM05D000579 ORTHO05D000741 5.9e-09 64.7 44 61.4
Manes.13G094500 Manihot esculenta HOM05D000579 ORTHO05D000741 7.7e-09 64.3 45 62.2
TPR.G6268 Trifolium pratense HOM05D000579 ORTHO05D000741 7.7e-09 64.3 45 62.2
Cpa.g.sc337.2 Carica papaya HOM05D000579 ORTHO05D000741 1.3e-08 63.5 44 59.1
Dinv08837 Davidia involucrata HOM05D000579 ORTHO05D000741 1.3e-08 63.5 38 71.1
Lj1g0004971 Lotus japonicus HOM05D000579 ORTHO05D000741 1.3e-08 63.5 45 62.2
arahy.Tifrunner.gnm1.ann1.R7V3DK Arachis hypogaea HOM05D000579 ORTHO05D000741 2.2e-08 62.8 40 67.5
Lalb_Chr13g0295951 Lupinus albus HOM05D000579 ORTHO05D000741 2.2e-08 62.8 38 68.4
arahy.Tifrunner.gnm1.ann1.DJ3VX7 Arachis hypogaea HOM05D000579 ORTHO05D000741 2.9e-08 62.4 52 55.8
Prupe.6G189600 Prunus persica HOM05D000579 ORTHO05D000741 2.9e-08 62.4 45 57.8
Sed0001631 Sechium edule HOM05D000579 ORTHO05D000741 6.5e-08 61.2 62 50.0
CSS0028654 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 8.5e-08 60.8 44 59.1
CANSAT01G0012 Cannabis sativa HOM05D000579 ORTHO05D000741 8.5e-08 60.8 46 58.7
Duzib264G0978 Durio zibethinus HOM05D000579 ORTHO05D000741 8.5e-08 60.8 41 61.0
Rhsim10G0164700 Rhododendron simsii HOM05D000579 ORTHO05D000741 8.5e-08 60.8 41 63.4
CiPaw.07G179300 Carya illinoinensis HOM05D000579 ORTHO05D000741 1.1e-07 60.5 56 53.6
Ca_17748_v3 Cicer arietinum L. HOM05D000579 ORTHO05D000741 1.4e-07 60.1 45 57.8
Nn1g05378 Nelumbo nucifera HOM05D000579 ORTHO05D000741 1.4e-07 60.1 41 65.9
arahy.Tifrunner.gnm1.ann1.EMNX2S Arachis hypogaea HOM05D000579 ORTHO05D000741 1.9e-07 59.7 52 55.8
Lj4g0016913 Lotus japonicus HOM05D000579 ORTHO05D000741 1.9e-07 59.7 44 61.4
QL12p036903 Quercus lobata HOM05D000579 ORTHO05D000741 1.9e-07 59.7 54 55.6
Atru.chr3.1411 Acer truncatum HOM05D000579 ORTHO05D000741 2.5e-07 59.3 37 70.3
Atru.chr4.1490 Acer truncatum HOM05D000579 ORTHO05D000741 2.5e-07 59.3 37 70.3
Actinidia10325 Actinidia chinensis HOM05D000579 ORTHO05D000741 2.5e-07 59.3 51 54.9
COL.COLO4_27269 Corchorus olitorius HOM05D000579 ORTHO05D000741 2.5e-07 59.3 46 56.5
Dinv14334 Davidia involucrata HOM05D000579 ORTHO05D000741 2.5e-07 59.3 49 57.1
Duzib147G0830 Durio zibethinus HOM05D000579 ORTHO05D000741 2.5e-07 59.3 41 61.0
Lj4A896T34 Lonicera japonica HOM05D000579 ORTHO05D000741 2.5e-07 59.3 45 55.6
QL06p048939 Quercus lobata HOM05D000579 ORTHO05D000741 2.5e-07 59.3 44 61.4
Eucgr.I00502 Eucalyptus grandis HOM05D000579 ORTHO05D000741 3.2e-07 58.9 38 68.4
Gohir.D11G055000 Gossypium hirsutum HOM05D000579 ORTHO05D000741 3.2e-07 58.9 38 60.5
Gorai.007G060300 Gossypium raimondii HOM05D000579 ORTHO05D000741 3.2e-07 58.9 38 60.5
Lj6g0005464 Lotus japonicus HOM05D000579 ORTHO05D000741 3.2e-07 58.9 38 65.8
CSS0029545 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 4.2e-07 58.5 62 48.4
CAN.G1177.1 Capsicum annuum HOM05D000579 ORTHO05D000741 4.2e-07 58.5 37 64.9
HanXRQChr15g0469491 Helianthus annuus HOM05D000579 ORTHO05D000741 4.2e-07 58.5 37 64.9
Peaxi162Scf00212g00214 Petunia axillaris HOM05D000579 ORTHO05D000741 4.2e-07 58.5 37 64.9
Prupe.1G518000 Prunus persica HOM05D000579 ORTHO05D000741 4.2e-07 58.5 48 54.2
vmacro21265 Vaccinium macrocarpon HOM05D000579 ORTHO05D000741 4.2e-07 58.5 64 46.9
TWI74G0928 Tripterygium wilfordii HOM05D000579 ORTHO05D000741 5.5e-07 58.2 58 46.6
GSVIVG01002221001 Vitis vinifera HOM05D000579 ORTHO05D000741 5.5e-07 58.2 41 58.5
GSVIVG01004313001 Vitis vinifera HOM05D000579 ORTHO05D000741 5.5e-07 58.2 41 58.5
CANSAT25G3544 Cannabis sativa HOM05D000579 ORTHO05D000741 7.2e-07 57.8 38 65.8
Nitab4.5_0004570g0090 Nicotiana tabacum HOM05D000579 ORTHO05D000741 7.2e-07 57.8 37 62.2
Rhsim06G0081300 Rhododendron simsii HOM05D000579 ORTHO05D000741 7.2e-07 57.8 53 50.9
Cfa002633 Carpinus fangiana HOM05D000579 ORTHO05D000741 9.4e-07 57.4 45 60.0
Gohir.A11G051600 Gossypium hirsutum HOM05D000579 ORTHO05D000741 9.4e-07 57.4 38 57.9
GSVIVG01002939001 Vitis vinifera HOM05D000579 ORTHO05D000741 9.4e-07 57.4 62 45.2
AUR62027769 Chenopodium quinoa HOM05D000579 ORTHO05D000741 1.2e-06 57.0 56 46.4
Haze_24899 Corylus avellana HOM05D000579 ORTHO05D000741 1.2e-06 57.0 44 54.5
MD08G1183900 Malus domestica HOM05D000579 ORTHO05D000741 1.2e-06 57.0 45 60.0
Medtr3g087050 Medicago truncatula HOM05D000579 ORTHO05D000741 1.6e-06 56.6 45 55.6
Nitab4.5_0000743g0200 Nicotiana tabacum HOM05D000579 ORTHO05D000741 1.6e-06 56.6 44 54.5
EL10Ac9g21488 Beta vulgaris HOM05D000579 ORTHO05D000741 2.1e-06 56.2 51 52.9
Ciclev10026111m.g Citrus clementina HOM05D000579 ORTHO05D000741 2.1e-06 56.2 37 59.5
MELO3C007750.2 Cucumis melo HOM05D000579 ORTHO05D000741 2.1e-06 56.2 45 57.8
MELO3C017612.2 Cucumis melo HOM05D000579 ORTHO05D000741 2.1e-06 56.2 35 68.6
CsaV3_6G045360 Cucumis sativus L. HOM05D000579 ORTHO05D000741 2.1e-06 56.2 45 57.8
FAN23G1262 Fragaria x ananassa HOM05D000579 ORTHO05D000741 2.1e-06 56.2 46 56.5
Lsat_1_v5_gn_6_103160 Lactuca sativa HOM05D000579 ORTHO05D000741 2.1e-06 56.2 51 52.9
Atru.chr13.1179 Acer truncatum HOM05D000579 ORTHO05D000741 2.7e-06 55.8 37 64.9
Cc07_g14980 Coffea canephora HOM05D000579 ORTHO05D000741 2.7e-06 55.8 42 54.8
Eucgr.H04767 Eucalyptus grandis HOM05D000579 ORTHO05D000741 2.7e-06 55.8 40 62.5
Glyma.18G016300 Glycine max HOM05D000579 ORTHO05D000741 2.7e-06 55.8 39 61.5
Phvul.006G206100 Phaseolus vulgaris HOM05D000579 ORTHO05D000741 2.7e-06 55.8 40 57.5
QL11p021340 Quercus lobata HOM05D000579 ORTHO05D000741 2.7e-06 55.8 46 56.5
CANSAT11G2708 Cannabis sativa HOM05D000579 ORTHO05D000741 3.6e-06 55.5 51 51.0
ClCG07G017330 Citrullus lanatus HOM05D000579 ORTHO05D000741 3.6e-06 55.5 35 65.7
Medtr8g090060 Medicago truncatula HOM05D000579 ORTHO05D000741 3.6e-06 55.5 45 57.8
Sabra05G0060700 Salix brachista HOM05D000579 ORTHO05D000741 3.6e-06 55.5 37 59.5
CiPaw.04G101300 Carya illinoinensis HOM05D000579 ORTHO05D000741 4.7e-06 55.1 50 52.0
FAN26G0101 Fragaria x ananassa HOM05D000579 ORTHO05D000741 4.7e-06 55.1 46 54.3
CSS0043463 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 6.1e-06 54.7 41 56.1
Eucgr.I00501 Eucalyptus grandis HOM05D000579 ORTHO05D000741 6.1e-06 54.7 38 63.2
Lalb_Chr04g0253131 Lupinus albus HOM05D000579 ORTHO05D000741 6.1e-06 54.7 41 63.4
RcHm_v2.0_Chr2g0113041 Rosa chinensis HOM05D000579 ORTHO05D000741 6.1e-06 54.7 47 53.2
Sc03g0002000 Simmondsia chinensis HOM05D000579 ORTHO05D000741 6.1e-06 54.7 37 59.5
FvH4_1g20610 Fragaria vesca HOM05D000579 ORTHO05D000741 7.9e-06 54.3 52 53.8
FAN19G0528 Fragaria x ananassa HOM05D000579 ORTHO05D000741 7.9e-06 54.3 52 53.8
MD01G1032400 Malus domestica HOM05D000579 ORTHO05D000741 7.9e-06 54.3 38 60.5
Rhsim05G0106300 Rhododendron simsii HOM05D000579 ORTHO05D000741 7.9e-06 54.3 40 57.5
SalBow5G5015 Salvia bowleyana HOM05D000579 ORTHO05D000741 7.9e-06 54.3 47 51.1
VMungo0540G1499 Vigna mungo HOM05D000579 ORTHO05D000741 7.9e-06 54.3 37 59.5


User provided reference genes

Program Settings