Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 1.4e-298 1028.9 543 100.0
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 7.0e-136 488.4 547 55.4
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 3.9e-134 482.6 560 54.8
VMungo1215G3226 Vigna mungo HOM05D004059 ORTHO05D004591 3.6e-132 476.1 531 56.5
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 4.1e-128 462.6 540 53.9
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 1.3e-126 457.6 515 56.7
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 4.7e-124 449.1 550 53.6
Phvul.003G135700 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 2.6e-122 443.4 513 54.6
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 2.1e-119 433.7 553 52.6
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 9.6e-117 424.9 562 51.6
VMungo1215G0279 Vigna mungo HOM05D004059 ORTHO05D004591 3.1e-115 419.9 523 52.8
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 2.9e-113 413.3 550 51.6
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 8.1e-108 395.2 554 49.6
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 1.1e-99 368.2 548 46.4
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 1.5e-98 364.4 551 46.6
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 1.1e-91 341.7 281 70.1
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 9.0e-91 338.6 554 44.6
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 4.5e-90 336.3 540 44.3
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 1.6e-87 327.8 548 41.4
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 2.1e-87 327.4 574 42.3
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 2.5e-85 320.5 551 41.6
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 4.3e-85 319.7 575 41.4
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 2.6e-82 310.5 573 39.8
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 5.9e-82 309.3 411 50.4
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 7.6e-82 308.9 547 41.9
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 7.6e-82 308.9 545 41.1
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 6.5e-81 305.8 551 40.8
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 8.4e-81 305.4 575 40.2
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 2.5e-80 303.9 547 41.9
arahy.Tifrunner.gnm1.ann1.MX4JUX Arachis hypogaea HOM05D004059 ORTHO05D004591 7.2e-80 302.4 545 41.1
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 2.7e-79 300.4 513 43.9
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 2.3e-78 297.4 569 40.1
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 5.1e-78 296.2 542 41.1
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.9e-77 294.3 583 38.3
arahy.Tifrunner.gnm1.ann1.0BQ45N Arachis hypogaea HOM05D004059 ORTHO05D004591 4.3e-77 293.1 549 38.8
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 1.3e-76 291.6 547 38.6
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 2.4e-75 287.3 416 48.8
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 2.4e-75 287.3 572 38.8
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 3.1e-75 287.0 609 38.1
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 9.0e-75 285.4 572 39.2
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 9.0e-75 285.4 590 38.3
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 2.0e-74 284.3 600 38.0
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 1.3e-73 281.6 577 38.1
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 2.9e-73 280.4 563 39.4
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 2.9e-73 280.4 543 37.9
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 5.0e-73 279.6 554 37.4
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 4.2e-72 276.6 540 38.5
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.6e-71 274.6 591 37.4
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 2.1e-71 274.2 517 39.7
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 6.1e-71 272.7 591 37.4
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 6.1e-71 272.7 541 36.8
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.0e-70 271.9 554 38.8
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 1.0e-70 271.9 565 37.2
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.4e-70 271.6 592 37.5
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 1.8e-70 271.2 548 38.3
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 5.1e-70 269.6 544 37.7
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 8.8e-70 268.9 553 38.9
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.0e-69 267.7 586 36.7
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 2.0e-69 267.7 582 36.8
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 3.3e-69 266.9 554 39.9
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 3.3e-69 266.9 560 37.0
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 7.4e-69 265.8 563 36.8
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 7.4e-69 265.8 554 38.8
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.0e-66 257.7 500 40.8
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 2.6e-66 257.3 541 34.8
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 5.9e-66 256.1 513 38.0
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 3.8e-65 253.4 551 35.8
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 1.4e-64 251.5 545 36.1
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 2.5e-64 250.8 558 37.1
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 3.2e-64 250.4 532 35.3
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 5.5e-64 249.6 558 36.2
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 2.1e-63 247.7 536 36.6
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 1.1e-61 241.9 500 38.0
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 1.7e-60 238.0 567 35.1
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 3.7e-60 236.9 565 35.4
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 2.4e-59 234.2 549 35.0
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 4.1e-59 233.4 536 36.6
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 7.0e-59 232.6 556 34.4
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 9.1e-59 232.3 545 34.1
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 1.2e-58 231.9 530 33.8
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 4.5e-58 229.9 546 37.0
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 1.7e-57 228.0 498 36.5
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 2.9e-57 227.3 530 33.6
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 3.8e-57 226.9 567 34.6
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 3.8e-57 226.9 567 34.6
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 1.1e-56 225.3 430 40.0
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 7.2e-56 222.6 556 34.2
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 4.7e-55 219.9 421 41.8
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 1.0e-54 218.8 503 34.2
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 1.8e-54 218.0 534 34.6
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 6.7e-54 216.1 483 36.9
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 8.8e-54 215.7 555 34.1
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 1.5e-53 214.9 571 33.8
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 2.6e-53 214.2 657 30.0
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 4.4e-53 213.4 568 32.6
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 1.7e-52 211.5 473 37.0
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 4.8e-52 209.9 472 33.9
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 8.2e-52 209.1 552 33.3
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 3.1e-51 207.2 543 33.1
Sc08g0008540 Simmondsia chinensis HOM05D004059 ORTHO05D004591 4.1e-51 206.8 541 32.5
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 1.2e-50 205.3 498 33.9
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 1.6e-50 204.9 558 32.8
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 2.0e-50 204.5 535 33.8
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 7.7e-50 202.6 537 32.6
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 3.8e-49 200.3 515 34.8
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 8.5e-49 199.1 415 37.8
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 9.4e-48 195.7 513 35.7
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 1.2e-47 195.3 520 32.9
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 1.6e-47 194.9 548 32.7
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.1e-47 194.5 515 33.4
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 2.7e-47 194.1 536 32.3
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.2e-44 184.5 497 34.0
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 4.8e-44 183.3 414 37.2
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 8.3e-44 182.6 509 33.6
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 1.4e-43 181.8 519 32.9
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 4.1e-43 180.3 393 38.2
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 1.3e-41 175.3 568 30.5
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 6.5e-41 172.9 485 30.5
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 5.5e-40 169.9 520 31.9
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 1.8e-38 164.9 469 33.5
MELO3C004627.2 Cucumis melo HOM05D004059 ORTHO05D004591 5.7e-37 159.8 545 29.9
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 4.9e-36 156.8 392 34.9
ATR0749G078 Amborella trichopoda HOM05D004059 ORTHO05D004591 1.4e-35 155.2 531 30.3
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 5.6e-32 143.3 179 50.8
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 1.6e-31 141.7 292 36.6
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 3.6e-31 140.6 272 38.2
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 3.0e-30 137.5 471 32.3
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 3.0e-30 137.5 535 28.2
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 3.0e-30 137.5 237 43.5
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 7.5e-29 132.9 296 36.8
Actinidia38450 Actinidia chinensis HOM05D004059 ORTHO05D004591 9.8e-29 132.5 255 38.4
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 7.0e-27 126.3 294 36.7
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 3.5e-26 124.0 390 31.3
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 5.0e-25 120.2 477 29.1
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 5.6e-24 116.7 508 26.0
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 3.6e-23 114.0 201 41.3
HPP92_026782 Vanilla planifolia HOM05D004059 ORTHO05D004591 8.0e-23 112.8 498 26.1
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 3.1e-22 110.9 250 36.0
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 6.8e-22 109.8 378 32.5
Dinv42328 Davidia involucrata HOM05D004059 ORTHO05D004591 3.4e-21 107.5 229 36.2
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 8.3e-20 102.8 495 24.0
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 8.3e-20 102.8 270 36.3
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 3.2e-19 100.9 446 27.1
Os06g0570900 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 3.2e-19 100.9 562 27.0
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 7.0e-19 99.8 294 31.0
Zm00001eb240050 Zea mays HOM05D004059 ORTHO05D004591 6.0e-18 96.7 510 27.1
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.3e-17 95.5 424 27.4
HPP92_023889 Vanilla planifolia HOM05D004059 ORTHO05D004591 1.3e-17 95.5 294 30.6
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 7.3e-16 89.7 197 36.0
unitig_78.g29617 Utricularia gibba HOM05D004059 ORTHO05D004591 1.2e-15 89.0 369 27.6
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.4e-14 85.5 231 32.0
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 3.4e-13 80.9 208 35.1
TPR.G866 Trifolium pratense HOM05D004059 ORTHO05D004591 1.7e-12 78.6 85 55.3
TAR383G1057 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.7e-12 78.6 216 32.4
Os01g0575200 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.9e-11 75.1 182 33.0
BolC9t57705H Brassica oleracea HOM05D004059 ORTHO05D004591 4.1e-11 73.9 118 36.4
Zm00001eb160210 Zea mays HOM05D004059 ORTHO05D004591 7.1e-11 73.2 182 31.9
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.3e-09 68.9 231 33.3
SalBow1G5126 Salvia bowleyana HOM05D004059 ORTHO05D004591 2.3e-09 68.2 140 37.9
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 3.0e-09 67.8 202 29.2
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 6.6e-09 66.6 132 36.4
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 6.6e-09 66.6 81 45.7
Zm00001eb385110 Zea mays HOM05D004059 ORTHO05D004591 8.6e-09 66.2 502 23.7
Sed0000136 Sechium edule HOM05D004059 ORTHO05D004591 9.5e-08 62.8 115 39.1
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.6e-07 62.0 86 40.7
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 2.8e-07 61.2 136 35.3
Zm00001eb347270 Zea mays HOM05D004059 ORTHO05D004591 2.8e-07 61.2 84 44.0
Zm00001eb357120 Zea mays HOM05D004059 ORTHO05D004591 6.2e-07 60.1 144 31.9
SEGI_04365 Sequoiadendron giganteum HOM05D010622 ORTHO05D011909 8.1e-07 59.7 251 26.7
SEGI_18479 Sequoiadendron giganteum HOM05D001604 ORTHO05D001432 5.2e-06 57.0 66 47.0
Zm00001eb337860 Zea mays HOM05D004059 ORTHO05D004591 6.8e-06 56.6 113 32.7


User provided reference genes

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