Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 3.3e-105 385.2 211 100.0
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 7.0e-100 367.5 211 95.7
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 3.5e-91 338.6 208 88.9
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.3e-90 335.9 208 87.5
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 6.0e-83 311.2 208 81.7
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 1.2e-80 303.5 206 76.2
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 4.0e-79 298.5 211 77.7
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 1.5e-78 296.6 206 77.2
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 4.9e-77 291.6 206 74.3
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 1.4e-76 290.0 208 75.5
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 3.5e-75 285.4 210 72.9
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 6.0e-75 284.6 206 73.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 7.8e-75 284.3 206 74.3
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.3e-74 282.7 206 74.3
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 3.9e-74 282.0 210 70.5
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 3.9e-74 282.0 210 75.2
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 5.1e-74 281.6 206 69.9
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 1.5e-73 280.0 208 72.1
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 2.5e-73 279.3 206 73.3
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.3e-73 277.7 206 73.3
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 7.3e-73 277.7 206 72.8
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 9.6e-73 277.3 206 72.8
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 9.6e-73 277.3 208 74.5
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 2.1e-72 276.2 207 72.0
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.1e-72 276.2 204 73.5
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 2.8e-72 275.8 206 72.3
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 4.8e-72 275.0 208 71.6
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 6.2e-72 274.6 206 71.8
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 1.1e-71 273.9 209 70.8
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.4e-71 273.5 209 72.2
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 4.0e-71 271.9 206 71.8
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 9.0e-71 270.8 207 70.5
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 9.0e-71 270.8 204 71.6
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.0e-70 269.6 210 71.0
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.0e-70 269.6 211 70.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.0e-70 269.6 202 72.8
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 3.4e-70 268.9 204 71.1
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 7.6e-70 267.7 202 71.3
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 1.9e-68 263.1 209 69.4
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 5.4e-68 261.5 206 68.4
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 9.3e-68 260.8 209 69.9
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 1.2e-67 260.4 208 73.1
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.1e-67 259.6 180 76.1
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 3.6e-64 248.8 206 67.0
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 8.1e-64 247.7 206 63.6
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 1.4e-63 246.9 206 63.6
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 3.4e-62 242.3 206 63.1
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 7.6e-62 241.1 207 64.3
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 2.2e-61 239.6 211 63.0
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 3.8e-61 238.8 201 68.2
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.4e-60 236.9 209 62.2
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 3.2e-60 235.7 207 67.1
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 4.2e-60 235.3 204 64.7
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 7.4e-57 224.6 168 72.6
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 7.4e-57 224.6 206 57.8
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 1.3e-56 223.8 163 72.4
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 5.3e-55 218.4 204 61.8
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 2.2e-53 213.0 206 60.2
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 1.9e-52 209.9 206 57.8
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.6e-48 196.8 187 58.3
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.2e-43 180.6 209 56.0
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 3.3e-41 172.6 201 47.8
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.2e-40 169.9 201 47.8
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 6.1e-35 151.8 210 42.9
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 8.8e-34 147.9 104 73.1
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.0e-33 146.7 104 72.1
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 6.1e-27 125.2 210 42.4
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.5e-25 120.6 122 57.4
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 7.4e-25 118.2 104 60.6
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.6e-19 100.5 110 52.7
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.0e-18 97.8 90 60.0
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 9.7e-17 91.3 84 57.1
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 2.8e-16 89.7 114 40.4
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 1.0e-13 81.3 199 35.2
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 7.2e-12 75.1 54 66.7
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 6.1e-11 72.0 165 37.0
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 5.4e-07 58.9 199 29.1
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 1.2e-06 57.8 119 37.8
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 5.9e-06 55.5 188 27.1


User provided reference genes

Program Settings