Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 5.6e-112 407.5 191 100.0
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 6.8e-110 400.6 191 99.0
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 6.6e-105 384.0 188 95.2
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 3.1e-102 375.2 191 92.7
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.8e-101 370.9 182 91.8
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 5.6e-96 354.4 182 88.5
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 4.0e-94 348.2 182 85.2
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 5.2e-94 347.8 179 86.0
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 7.5e-93 344.0 189 83.1
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 9.8e-93 343.6 181 85.6
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 9.8e-93 343.6 181 85.6
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.7e-92 342.8 182 84.6
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.4e-91 339.7 180 83.3
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.9e-91 339.3 180 84.4
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.4e-91 337.8 181 83.4
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 5.4e-91 337.8 183 80.9
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 4.6e-90 334.7 180 81.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.0e-89 333.6 179 82.7
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 1.1e-88 330.1 204 75.0
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.9e-88 329.3 181 80.1
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.9e-88 329.3 181 81.8
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 4.3e-88 328.2 181 80.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 7.3e-88 327.4 183 80.3
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.5e-88 327.0 180 81.1
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 9.5e-88 327.0 180 81.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.5e-88 327.0 181 80.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.2e-87 326.6 184 79.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.6e-87 326.2 181 80.7
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.6e-87 326.2 178 82.0
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.1e-87 325.9 184 79.3
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 3.6e-87 325.1 184 78.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.7e-87 324.7 178 81.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.7e-87 324.7 178 81.5
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 4.7e-87 324.7 182 79.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.7e-87 324.7 179 80.4
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 6.2e-87 324.3 180 78.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 8.1e-87 323.9 188 78.7
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.1e-87 323.9 181 80.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.1e-87 323.9 181 80.1
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.8e-86 322.8 184 78.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.8e-86 322.8 184 78.3
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.8e-86 322.8 184 77.7
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.3e-86 322.4 183 79.2
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 2.3e-86 322.4 184 77.7
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 2.3e-86 322.4 181 79.0
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.1e-86 322.0 179 79.9
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.1e-86 322.0 181 78.5
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 4.0e-86 321.6 186 78.5
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.0e-86 321.6 179 79.9
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.8e-86 320.9 177 80.2
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 8.9e-86 320.5 184 77.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 8.9e-86 320.5 181 78.5
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 8.9e-86 320.5 180 78.9
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.2e-85 320.1 181 78.5
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.2e-85 320.1 181 79.0
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.2e-85 320.1 188 77.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-85 319.7 179 78.8
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.6e-85 318.9 185 77.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 4.4e-85 318.2 181 78.5
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 5.8e-85 317.8 180 78.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 5.8e-85 317.8 184 76.6
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.6e-85 317.4 180 78.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-84 316.6 180 76.7
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.2e-84 315.8 185 80.0
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.9e-84 315.5 196 74.5
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.9e-84 315.5 185 76.8
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.8e-84 315.1 186 76.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 4.9e-84 314.7 178 77.5
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 6.4e-84 314.3 172 80.8
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.4e-84 314.3 186 76.3
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.1e-83 313.5 180 80.0
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.1e-83 313.5 180 80.0
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.4e-83 312.4 181 76.8
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 2.4e-83 312.4 177 78.5
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.1e-83 311.6 175 79.4
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 5.4e-83 311.2 175 79.4
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 9.2e-83 310.5 180 76.1
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.2e-82 310.1 175 76.6
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.6e-82 309.7 178 75.8
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.6e-82 309.7 181 76.2
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.6e-82 309.7 181 76.2
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 2.7e-82 308.9 181 79.6
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 4.6e-82 308.1 186 73.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.3e-81 306.6 175 78.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 1.7e-81 306.2 177 77.4
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 3.0e-81 305.4 181 80.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.9e-81 305.1 205 69.8
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.5e-80 303.1 178 73.0
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.2e-79 300.1 210 67.1
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.6e-79 298.5 202 68.3
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.6e-77 292.4 163 79.1
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 3.4e-77 292.0 180 72.8
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 3.4e-77 292.0 180 72.8
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.4e-77 292.0 223 62.3
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.4e-77 291.6 223 61.9
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 5.8e-77 291.2 183 70.5
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 7.6e-77 290.8 150 84.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.8e-76 288.5 164 78.0
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.9e-76 288.1 176 72.7
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.1e-75 287.0 161 78.9
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 4.2e-75 285.0 150 82.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 2.1e-74 282.7 179 69.3
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.0e-73 280.4 150 82.0
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.7e-73 279.6 164 77.4
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 5.1e-73 278.1 148 81.8
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.9e-72 276.2 175 70.3
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.9e-72 276.2 175 70.3
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 3.3e-72 275.4 190 67.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 1.6e-71 273.1 177 67.2
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 2.1e-71 272.7 141 83.7
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 3.1e-70 268.9 157 75.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 4.0e-70 268.5 206 61.2
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 5.8e-69 264.6 157 74.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.7e-68 263.1 147 77.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.2e-68 262.7 167 72.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.8e-68 261.9 284 50.7
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.6e-66 255.0 154 74.7
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 7.9e-66 254.2 184 64.1
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.5e-61 240.0 180 64.4
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 2.8e-55 219.2 179 54.2
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 2.8e-55 219.2 178 57.9
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.1e-55 217.6 118 79.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 8.1e-55 217.6 177 55.9
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 1.8e-54 216.5 190 58.4
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.1e-54 215.7 181 58.6
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 7.4e-48 194.5 205 50.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.4e-45 185.7 172 45.9
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.4e-45 185.7 172 45.9
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.9e-44 182.6 192 53.6
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 6.5e-44 181.4 120 67.5
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 8.5e-44 181.0 190 46.8
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.5e-43 178.3 91 84.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-40 168.7 90 81.1
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.7e-40 168.3 143 56.6
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.2e-39 166.4 178 41.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.1e-38 162.5 179 39.1
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.1e-38 162.2 205 38.5
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 1.2e-37 160.6 161 47.2
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-35 153.7 149 52.3
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 3.6e-34 149.1 142 45.1
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 8.8e-33 144.4 92 65.2
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.2e-28 129.8 95 63.2
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 3.2e-11 72.8 47 74.5
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.2e-11 72.8 41 75.6
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 4.8e-07 58.9 37 81.1
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.8e-07 58.9 39 69.2


User provided reference genes

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