Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 1.5e-145 519.6 292 100.0
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 3.8e-136 488.4 307 88.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 1.1e-122 443.7 301 82.4
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 1.4e-122 443.4 301 76.7
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 1.4e-119 433.3 312 76.6
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 7.9e-118 427.6 305 75.1
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-114 417.2 300 74.7
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 1.8e-114 416.4 300 75.0
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 3.4e-113 412.1 306 70.3
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 8.5e-112 407.5 312 71.2
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.4e-106 390.2 309 66.7
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 7.5e-100 367.9 310 64.2
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 4.1e-98 362.1 309 68.6
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 1.6e-97 360.1 298 63.1
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 2.0e-97 359.8 220 77.3
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 2.0e-97 359.8 215 79.5
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 3.5e-97 359.0 301 65.8
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 1.7e-96 356.7 302 65.6
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 2.2e-96 356.3 307 60.9
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.2e-96 356.3 319 60.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.2e-96 356.3 311 62.7
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.9e-96 355.9 295 62.7
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 5.0e-96 355.1 215 76.7
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 6.5e-96 354.8 297 62.3
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 6.5e-96 354.8 316 65.2
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.1e-95 354.0 306 61.4
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 1.1e-95 354.0 300 61.3
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 1.5e-95 353.6 301 66.4
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 7.2e-95 351.3 217 75.1
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 7.2e-95 351.3 307 63.2
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 1.2e-94 350.5 310 62.6
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 1.2e-94 350.5 220 75.5
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.6e-94 350.1 217 75.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 2.1e-94 349.7 217 77.0
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 4.7e-94 348.6 217 73.3
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 4.7e-94 348.6 220 74.5
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 8.0e-94 347.8 316 64.6
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 1.0e-93 347.4 301 64.8
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 1.4e-93 347.1 217 75.1
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.4e-93 347.1 217 74.7
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 1.8e-93 346.7 297 61.6
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.3e-93 346.3 297 61.6
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 2.3e-93 346.3 296 61.5
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 5.2e-93 345.1 219 75.3
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 8.8e-93 344.4 217 74.7
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.2e-92 344.0 297 62.0
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 1.2e-92 344.0 294 59.9
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 1.2e-92 344.0 219 75.3
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 3.4e-92 342.4 221 74.2
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 4.4e-92 342.0 316 61.1
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 5.7e-92 341.7 217 75.6
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 9.8e-92 340.9 216 72.2
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 2.2e-91 339.7 295 60.3
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 4.8e-91 338.6 218 72.0
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 3.1e-90 335.9 302 57.6
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 4.1e-90 335.5 241 67.6
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 4.1e-90 335.5 218 72.0
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 7.0e-90 334.7 218 70.6
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 9.1e-90 334.3 218 71.1
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.6e-89 333.6 290 59.3
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 7.7e-89 331.3 200 78.5
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 1.7e-88 330.1 218 70.2
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.7e-88 330.1 292 57.9
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.7e-88 330.1 292 57.9
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.2e-88 329.7 302 60.3
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 2.9e-88 329.3 296 57.8
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.9e-88 329.3 216 69.4
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 3.8e-88 328.9 217 71.0
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 3.8e-88 328.9 218 70.6
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 5.0e-88 328.6 285 57.9
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 6.5e-88 328.2 291 58.8
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 6.5e-88 328.2 291 57.7
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 6.5e-88 328.2 298 57.4
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 8.5e-88 327.8 291 57.7
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 1.5e-87 327.0 295 57.6
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 3.2e-87 325.9 232 69.8
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 3.2e-87 325.9 239 65.3
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 4.2e-87 325.5 218 70.2
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 5.5e-87 325.1 209 70.3
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 1.2e-86 323.9 301 57.5
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 2.1e-86 323.2 211 71.6
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.1e-86 323.2 218 68.8
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 4.7e-86 322.0 299 56.5
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 6.1e-86 321.6 273 60.8
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 8.0e-86 321.2 218 69.7
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 1.0e-85 320.9 217 71.0
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.8e-85 320.1 296 58.4
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 1.8e-85 320.1 253 71.5
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 4.0e-85 318.9 211 71.6
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 5.2e-85 318.5 214 70.6
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 6.8e-85 318.2 218 67.0
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 1.2e-84 317.4 219 69.9
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 1.5e-84 317.0 213 67.6
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.0e-84 316.6 214 70.1
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 2.0e-84 316.6 220 67.3
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 3.4e-84 315.8 215 69.3
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 9.8e-84 314.3 217 67.3
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 2.2e-83 313.2 220 68.6
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 3.7e-83 312.4 218 68.8
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 3.7e-83 312.4 214 67.8
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 4.9e-83 312.0 211 67.8
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.4e-82 310.5 198 73.7
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 9.2e-82 307.8 215 68.8
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.2e-81 307.4 211 65.9
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 2.7e-81 306.2 211 68.2
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 3.5e-81 305.8 224 68.8
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 4.5e-81 305.4 191 74.3
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 5.6e-79 298.5 232 59.9
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 2.6e-76 289.7 204 67.2
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 2.9e-75 286.2 292 55.1
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 2.1e-70 270.0 177 70.6
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.0e-69 267.7 215 58.1
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 8.3e-67 258.1 209 55.5
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 3.5e-65 252.7 209 56.0
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.3e-64 250.8 322 51.9
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.6e-62 243.8 201 60.7
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 6.8e-61 238.4 231 50.6
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.7e-59 233.8 166 68.1
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 5.4e-58 228.8 191 61.8
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 5.1e-48 195.7 188 54.3
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 8.4e-43 178.3 109 76.1
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 1.6e-41 174.1 144 59.7
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 6.0e-41 172.2 161 52.8
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.6e-38 164.1 108 71.3
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 2.4e-37 160.2 83 89.2
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-37 159.8 83 90.4
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.5e-36 157.5 152 53.3
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 1.2e-33 147.9 207 38.6
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 7.4e-31 138.7 83 79.5
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 6.2e-30 135.6 68 91.2
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.4e-29 134.4 125 54.4
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 5.5e-26 122.5 150 38.7
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 1.8e-24 117.5 199 30.7
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 1.4e-18 97.8 57 80.7
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 6.3e-14 82.4 83 54.2
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 1.1e-13 81.6 57 64.9
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 2.0e-12 77.4 55 61.8
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 6.5e-11 72.4 49 75.5
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 2.1e-09 67.4 31 93.5
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.0e-08 65.1 49 63.3
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 6.7e-08 62.4 28 96.4
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 2.5e-07 60.5 40 67.5
BraA07t29264Z Brassica rapa HOM05D005557 ORTHO05D027294 7.4e-07 58.9 35 77.1
Migut.J00958 Erythranthe guttata HOM05D005557 ORTHO05D006748 9.7e-07 58.5 49 51.0


User provided reference genes

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