Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 1.2e-149 533.5 339 100.0
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 2.5e-115 419.5 338 81.7
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 1.9e-110 403.3 337 78.0
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.3e-108 396.4 337 77.2
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 7.4e-75 285.0 351 55.3
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 1.1e-73 281.2 353 59.2
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 1.8e-73 280.4 354 59.9
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 2.5e-70 270.0 354 57.3
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 4.5e-64 249.2 360 54.7
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.9e-62 243.8 341 55.4
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-46 191.4 361 51.0
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 2.6e-43 180.3 355 50.4
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 3.7e-42 176.4 350 51.4
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 3.5e-40 169.9 370 45.9
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 2.2e-39 167.2 364 42.3
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 1.9e-38 164.1 287 56.1
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 4.2e-38 162.9 366 44.0
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 1.0e-36 158.3 387 35.1
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 8.8e-36 155.2 364 43.1
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 1.5e-35 154.5 350 33.7
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 2.6e-35 153.7 380 40.8
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.7e-34 151.0 147 57.8
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 3.7e-34 149.8 356 39.0
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 1.3e-31 141.4 139 54.7
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 8.5e-31 138.7 378 37.0
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 1.5e-30 137.9 334 47.3
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.5e-30 137.9 325 36.9
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 1.6e-29 134.4 382 34.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 2.1e-29 134.0 401 35.4
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 6.1e-29 132.5 374 35.8
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 1.0e-28 131.7 134 51.5
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.4e-28 131.3 354 38.1
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 2.3e-28 130.6 371 36.7
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 2.3e-28 130.6 407 39.3
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 3.0e-28 130.2 381 38.8
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 4.0e-28 129.8 133 51.1
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 5.7e-27 125.9 417 36.2
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 1.3e-26 124.8 134 50.7
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.2e-26 124.0 382 30.1
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 2.8e-26 123.6 380 33.2
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 3.7e-26 123.2 378 36.2
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 6.3e-26 122.5 367 33.2
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 6.3e-26 122.5 140 50.0
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 6.3e-26 122.5 361 31.0
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 6.3e-26 122.5 321 34.9
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 8.3e-26 122.1 371 32.9
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 8.3e-26 122.1 371 35.6
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 1.4e-25 121.3 369 36.3
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 1.4e-25 121.3 369 36.3
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 1.4e-25 121.3 352 41.2
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 1.8e-25 120.9 356 39.3
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 1.8e-25 120.9 382 35.3
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 3.1e-25 120.2 319 37.3
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 4.1e-25 119.8 352 38.6
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 5.4e-25 119.4 306 37.6
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 7.0e-25 119.0 310 42.6
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 9.1e-25 118.6 378 32.5
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 9.1e-25 118.6 146 45.9
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 1.2e-24 118.2 370 37.0
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.2e-24 118.2 366 35.5
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.2e-24 118.2 117 52.1
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 1.2e-24 118.2 324 31.2
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.6e-24 117.9 103 56.3
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 1.6e-24 117.9 325 31.7
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 2.0e-24 117.5 322 32.9
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 2.7e-24 117.1 362 35.9
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 2.7e-24 117.1 108 56.5
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 4.5e-24 116.3 108 56.5
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 7.7e-24 115.5 376 33.0
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 7.7e-24 115.5 128 50.0
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.0e-23 115.2 117 52.1
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 1.7e-23 114.4 338 32.2
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 2.3e-23 114.0 349 33.0
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 6.6e-23 112.5 96 58.3
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 8.6e-23 112.1 124 49.2
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 1.5e-22 111.3 333 39.9
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.9e-22 110.9 115 53.0
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 5.5e-22 109.4 340 41.2
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 1.6e-21 107.8 361 28.3
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 2.1e-21 107.5 108 52.8
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 2.8e-21 107.1 98 62.2
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 2.8e-21 107.1 314 40.8
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 8.0e-21 105.5 152 42.8
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 8.0e-21 105.5 306 33.0
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 1.0e-20 105.1 412 32.8
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.0e-20 105.1 129 48.1
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.4e-20 104.8 305 43.6
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.8e-20 104.4 118 49.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 2.3e-20 104.0 123 48.0
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 2.3e-20 104.0 413 31.7
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 4.0e-20 103.2 104 55.8
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 5.2e-20 102.8 105 50.5
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 6.8e-20 102.4 147 43.5
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 8.9e-20 102.1 332 35.2
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.2e-19 101.7 100 55.0
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.5e-19 101.3 400 28.0
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 2.0e-19 100.9 92 54.3
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.6e-19 100.5 111 49.5
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 7.5e-19 99.0 349 35.2
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 9.8e-19 98.6 102 52.0
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 2.8e-18 97.1 104 47.1
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 3.7e-18 96.7 357 31.9
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 4.9e-18 96.3 372 28.5
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 6.3e-18 95.9 94 55.3
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 6.3e-18 95.9 364 30.2
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 8.3e-18 95.5 364 30.2
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.1e-17 95.1 339 33.0
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 3.2e-17 93.6 96 47.9
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 4.1e-17 93.2 104 49.0
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 5.4e-17 92.8 92 52.2
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 4.5e-16 89.7 154 38.3
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 4.7e-13 79.7 66 56.1
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 4.4e-11 73.2 69 55.1
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.8e-11 72.8 89 43.8
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 4.9e-10 69.7 82 51.2
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 4.9e-10 69.7 97 37.1
arahy.Tifrunner.gnm1.ann1.V4J88K Arachis hypogaea HOM05D005773 ORTHO05D006930 7.0e-09 65.9 124 38.7
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 9.2e-09 65.5 97 35.1
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 2.0e-08 64.3 90 42.2
Mapoly0035s0141 Marchantia polymorpha HOM05D005773 ORTHO05D006930 4.6e-08 63.2 100 33.0
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 7.8e-08 62.4 53 56.6
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 8.6e-07 58.9 135 34.8
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 4.3e-06 56.6 135 30.4
Pp3c17_20330 Physcomitrium patens HOM05D029403 ORTHO05D006930 5.6e-06 56.2 54 44.4
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 9.5e-06 55.5 78 38.5


User provided reference genes

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