Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G040566 Glycine max HOM05D006810 ORTHO05D008501 7.1e-50 200.3 101 100.0
Glyma.13G119600 Glycine max HOM05D006810 ORTHO05D008501 8.2e-22 107.1 81 74.1
GSVIVG01017689001 Vitis vinifera HOM05D006810 ORTHO05D008501 1.8e-21 105.9 80 71.2
Lj4g0002680 Lotus japonicus HOM05D006810 ORTHO05D008501 3.1e-21 105.1 81 69.1
Phvul.003G121500 Phaseolus vulgaris HOM05D006810 ORTHO05D008501 4.1e-21 104.8 81 72.8
Cc01_g04920 Coffea canephora HOM05D006810 ORTHO05D008501 9.1e-21 103.6 71 73.2
Medtr4g123930 Medicago truncatula HOM05D006810 ORTHO05D008501 9.1e-21 103.6 81 69.1
arahy.Tifrunner.gnm1.ann1.SJ5ARF Arachis hypogaea HOM05D006810 ORTHO05D008501 1.5e-20 102.8 81 70.4
arahy.Tifrunner.gnm1.ann1.TV1R4T Arachis hypogaea HOM05D006810 ORTHO05D008501 1.5e-20 102.8 81 70.4
Lalb_Chr07g0181671 Lupinus albus HOM05D006810 ORTHO05D008501 3.4e-20 101.7 81 69.1
Psat0s2012g0240 Pisum sativum HOM05D006810 ORTHO05D008501 1.0e-19 100.1 81 66.7
VMungo1215G0142 Vigna mungo HOM05D006810 ORTHO05D008501 2.2e-19 99.0 81 69.1
Ca_21378_v3 Cicer arietinum L. HOM05D006810 ORTHO05D008501 2.9e-19 98.6 81 65.4
Ca_30146_v3 Cicer arietinum L. HOM05D006810 ORTHO05D008501 2.9e-19 98.6 81 65.4
TWI73G0269 Tripterygium wilfordii HOM05D006810 ORTHO05D008501 2.9e-19 98.6 81 66.7
PGSC0003DMG400004684 Solanum tuberosum HOM05D006810 ORTHO05D008501 3.8e-19 98.2 73 67.1
MBI19_g30276_MAGBIO Magnolia biondii HOM05D006810 ORTHO05D008501 5.0e-19 97.8 80 66.2
TPR.G12536 Trifolium pratense HOM05D006810 ORTHO05D008501 5.0e-19 97.8 81 65.4
MELO3C006759.2 Cucumis melo HOM05D006810 ORTHO05D008501 6.5e-19 97.4 75 69.3
Lsat_1_v5_gn_6_69640 Lactuca sativa HOM05D006810 ORTHO05D008501 6.5e-19 97.4 80 67.5
CsaV3_3G015600 Cucumis sativus L. HOM05D006810 ORTHO05D008501 1.9e-18 95.9 75 68.0
Sp3g15650 Schrenkiella parvula HOM05D006810 ORTHO05D008501 2.5e-18 95.5 84 65.5
Sed0012953 Sechium edule HOM05D006810 ORTHO05D008501 2.5e-18 95.5 75 68.0
Peaxi162Scf00668g00118 Petunia axillaris HOM05D006810 ORTHO05D008501 3.2e-18 95.1 73 63.0
AT3G17470 Arabidopsis thaliana HOM05D006810 ORTHO05D008501 4.2e-18 94.7 76 67.1
CARHR092800 Cardamine hirsuta HOM05D006810 ORTHO05D008501 4.2e-18 94.7 76 67.1
ClCG05G006930 Citrullus lanatus HOM05D006810 ORTHO05D008501 4.2e-18 94.7 78 67.9
FAN07G2948 Fragaria x ananassa HOM05D006810 ORTHO05D008501 4.2e-18 94.7 73 67.1
MD13G1139600 Malus domestica HOM05D006810 ORTHO05D008501 4.2e-18 94.7 80 62.5
RcHm_v2.0_Chr4g0427541 Rosa chinensis HOM05D006810 ORTHO05D008501 4.2e-18 94.7 73 67.1
Atru.chr4.3152 Acer truncatum HOM05D006810 ORTHO05D008501 9.4e-18 93.6 81 63.0
FAN17G1488 Fragaria x ananassa HOM05D006810 ORTHO05D008501 9.4e-18 93.6 73 67.1
Ciclev10004629m.g Citrus clementina HOM05D006810 ORTHO05D008501 1.6e-17 92.8 81 64.2
Prupe.1G105100 Prunus persica HOM05D006810 ORTHO05D008501 2.1e-17 92.4 73 65.8
FvH4_4g21520 Fragaria vesca HOM05D006810 ORTHO05D008501 2.7e-17 92.0 73 65.8
FAN12G1784 Fragaria x ananassa HOM05D006810 ORTHO05D008501 2.7e-17 92.0 73 65.8
FAN19G3059 Fragaria x ananassa HOM05D006810 ORTHO05D008501 2.7e-17 92.0 73 65.8
Haze_00765 Corylus avellana HOM05D006810 ORTHO05D008501 4.7e-17 91.3 80 63.8
A03p40200 Brassica napus HOM05D006810 ORTHO05D008501 3.0e-16 88.6 84 60.7
BraA03t13173Z Brassica rapa HOM05D006810 ORTHO05D008501 3.0e-16 88.6 84 60.7
Os05g0161200 Oryza sativa ssp. japonica HOM05D006810 ORTHO05D008501 3.0e-16 88.6 73 58.9
Zm00001eb282440 Zea mays HOM05D006810 ORTHO05D008501 3.9e-16 88.2 73 60.3
Cfa015731 Carpinus fangiana HOM05D006810 ORTHO05D008501 2.6e-15 85.5 80 60.0
Actinidia18508 Actinidia chinensis HOM05D006810 ORTHO05D008501 3.3e-15 85.1 68 67.6
PGR004G1823 Punica granatum HOM05D006810 ORTHO05D008501 5.7e-15 84.3 68 66.2
Sabra10G0001900 Salix brachista HOM05D006810 ORTHO05D008501 5.7e-15 84.3 81 59.3
CSS0007810 Camellia sinensis var. sinensis HOM05D006810 ORTHO05D008501 7.4e-15 84.0 73 63.0
QL06p014243 Quercus lobata HOM05D006810 ORTHO05D008501 9.7e-15 83.6 72 63.9
Thecc.04G313200 Theobroma cacao HOM05D006810 ORTHO05D008501 2.8e-14 82.0 81 58.0
Hma1.2p1_0013F.1_g007900 Hydrangea macrophylla HOM05D006810 ORTHO05D008501 4.8e-14 81.3 70 62.9
Nitab4.5_0000895g0190 Nicotiana tabacum HOM05D006810 ORTHO05D008501 6.3e-14 80.9 73 57.5
BcaC01g03759 Brassica carinata HOM05D006810 ORTHO05D008501 8.2e-14 80.5 84 57.1
C03p48880 Brassica napus HOM05D006810 ORTHO05D008501 8.2e-14 80.5 84 57.1
BolC3t17168H Brassica oleracea HOM05D006810 ORTHO05D008501 8.2e-14 80.5 84 57.1
MSTRG.21741 Avicennia marina HOM05D006810 ORTHO05D008501 1.1e-13 80.1 87 52.9
Potri.010G002400 Populus trichocarpa HOM05D006810 ORTHO05D008501 1.1e-13 80.1 81 56.8
Migut.L00019 Erythranthe guttata HOM05D006810 ORTHO05D008501 1.4e-13 79.7 73 58.9
TAR365G1135 Trochodendron aralioides HOM05D006810 ORTHO05D008501 1.4e-13 79.7 71 59.2
AL3G30560 Arabidopsis lyrata HOM05D006810 ORTHO05D008501 2.4e-13 79.0 76 57.9
COL.COLO4_34515 Corchorus olitorius HOM05D006810 ORTHO05D008501 2.4e-13 79.0 81 55.6
Ah.07g203660 Amaranthus hybridus HOM05D006810 ORTHO05D008501 5.3e-13 77.8 73 56.2
Oeu002199.1 Olea europaea HOM05D006810 ORTHO05D008501 5.3e-13 77.8 80 57.5
AUR62029975 Chenopodium quinoa HOM05D006810 ORTHO05D008501 7.0e-13 77.4 73 56.2
Nitab4.5_0003998g0010 Nicotiana tabacum HOM05D006810 ORTHO05D008501 9.1e-13 77.0 73 53.4
BcaB04g18944 Brassica carinata HOM05D006810 ORTHO05D008501 1.6e-12 76.3 84 54.8
Duzib212G0235 Durio zibethinus HOM05D006810 ORTHO05D008501 1.6e-12 76.3 81 54.3
HanXRQChr08g0236241 Helianthus annuus HOM05D006810 ORTHO05D008501 1.6e-12 76.3 73 57.5
Manes.02G178200 Manihot esculenta HOM05D006810 ORTHO05D008501 2.0e-12 75.9 73 54.8
ATR0796G096 Amborella trichopoda HOM05D006810 ORTHO05D008501 2.6e-12 75.5 59 69.5
Thhalv10020367m.g Eutrema salsugineum HOM05D006810 ORTHO05D008501 2.6e-12 75.5 84 54.8
SalBow5G2309 Salvia bowleyana HOM05D006810 ORTHO05D008501 2.6e-12 75.5 57 71.9
SalBow5G3419 Salvia bowleyana HOM05D006810 ORTHO05D008501 2.6e-12 75.5 57 71.9
Sopen12g033670 Solanum pennellii HOM05D006810 ORTHO05D008501 3.5e-12 75.1 73 52.1
Gohir.A10G176700 Gossypium hirsutum HOM05D006810 ORTHO05D008501 4.5e-12 74.7 81 53.1
Gohir.D10G183400 Gossypium hirsutum HOM05D006810 ORTHO05D008501 4.5e-12 74.7 81 53.1
Gorai.011G205600 Gossypium raimondii HOM05D006810 ORTHO05D008501 4.5e-12 74.7 81 53.1
CiPaw.01G129100 Carya illinoinensis HOM05D006810 ORTHO05D008501 5.9e-12 74.3 81 51.9
AUR62002555 Chenopodium quinoa HOM05D006810 ORTHO05D008501 7.7e-12 73.9 73 53.4
PSO761G0164 Papaver somniferum HOM05D006810 ORTHO05D008501 1.0e-11 73.6 80 53.8
Solyc12g098920.2 Solanum lycopersicum HOM05D006810 ORTHO05D008501 1.7e-11 72.8 73 50.7
Aqoxy2G02512 Aquilegia oxysepala HOM05D006810 ORTHO05D008501 3.8e-11 71.6 73 53.4
CAN.G484.92 Capsicum annuum HOM05D006810 ORTHO05D008501 3.8e-11 71.6 72 51.4
Carub.0003s1720 Capsella rubella HOM05D006810 ORTHO05D008501 1.5e-10 69.7 76 52.6
EL10Ac3g06253 Beta vulgaris HOM05D006810 ORTHO05D008501 1.9e-10 69.3 101 43.6
ECA233G2595 Erigeron canadensis HOM05D006810 ORTHO05D008501 9.4e-10 67.0 81 53.1
DCAR_002552 Daucus carota HOM05D006810 ORTHO05D008501 1.2e-09 66.6 73 50.7
Aa31LG8G4420 Aethionema arabicum HOM05D006810 ORTHO05D008501 1.6e-09 66.2 76 51.3
unitig_749.g13347 Utricularia gibba HOM05D006810 ORTHO05D008501 2.7e-09 65.5 63 57.1
Rhsim04G0248400 Rhododendron simsii HOM05D006810 ORTHO05D008501 1.0e-08 63.5 102 42.2
SGA_v2.0_scaffold47G17643 Striga asiatica HOM05D006810 ORTHO05D008501 1.8e-08 62.8 73 50.7
Lj3A840T136 Lonicera japonica HOM05D006810 ORTHO05D008501 4.0e-08 61.6 45 68.9
THA.LOC104824719 Tarenaya hassleriana HOM05D006810 ORTHO05D008501 3.3e-07 58.5 65 49.2
HPP92_026059 Vanilla planifolia HOM05D006810 ORTHO05D008501 9.7e-07 57.0 71 46.5
vmacro08013 Vaccinium macrocarpon HOM05D006810 ORTHO05D008501 4.8e-06 54.7 99 39.4
MBI19_g47475_MAGBIO Magnolia biondii HOM05D006810 ORTHO05D008501 6.3e-06 54.3 43 62.8
Nn4g25376 Nelumbo nucifera HOM05D006810 ORTHO05D008501 8.2e-06 53.9 70 44.3


User provided reference genes

Program Settings