Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.3e-67 259.6 132 100.0
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.5e-28 129.8 101 71.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.0e-28 129.4 103 68.0
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.0e-28 129.4 101 70.3
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.0e-28 129.4 101 70.3
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 5.9e-28 127.9 101 69.3
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 5.9e-28 127.9 101 70.3
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.0e-27 127.1 101 68.3
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.0e-27 127.1 101 70.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-27 126.3 101 66.3
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.2e-27 125.9 101 68.3
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.9e-27 125.6 101 67.3
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.9e-27 125.6 112 64.3
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.8e-27 125.2 101 66.3
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 3.8e-27 125.2 101 69.3
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.8e-27 125.2 101 67.3
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 3.8e-27 125.2 101 67.3
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.0e-27 124.8 101 67.3
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 5.0e-27 124.8 101 66.3
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 5.0e-27 124.8 102 67.6
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 5.0e-27 124.8 102 67.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 66.3
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 66.3
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 66.3
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 6.5e-27 124.4 98 70.4
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 6.5e-27 124.4 101 68.3
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 8.5e-27 124.0 101 67.3
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.5e-27 124.0 101 66.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 8.5e-27 124.0 101 66.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 8.5e-27 124.0 103 66.0
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.1e-26 123.6 101 66.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.1e-26 123.6 101 66.3
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.1e-26 123.6 101 66.3
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-26 123.6 101 68.3
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-26 123.6 101 68.3
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.4e-26 123.2 101 69.3
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.4e-26 123.2 101 66.3
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-26 123.2 101 67.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-26 122.9 101 68.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.9e-26 122.9 102 66.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.9e-26 122.9 101 67.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.9e-26 122.9 110 63.6
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.9e-26 122.9 101 67.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.9e-26 122.9 101 68.3
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 65.3
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 65.3
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 65.3
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 65.3
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 67.3
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.5e-26 122.5 101 65.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 3.2e-26 122.1 101 67.3
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.2e-26 122.1 101 66.3
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 3.2e-26 122.1 101 66.3
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.2e-26 121.7 101 67.3
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 4.2e-26 121.7 99 68.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.2e-26 121.7 99 68.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.2e-26 121.7 101 67.3
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.2e-26 121.7 99 67.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.5e-26 121.3 103 66.0
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 7.2e-26 120.9 101 66.3
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 7.2e-26 120.9 101 66.3
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 7.2e-26 120.9 101 65.3
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 7.2e-26 120.9 101 65.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.2e-26 120.9 101 66.3
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 9.4e-26 120.6 101 67.3
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 9.4e-26 120.6 101 66.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 9.4e-26 120.6 101 66.3
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.2e-25 120.2 101 67.3
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.2e-25 120.2 101 65.3
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-25 120.2 99 66.7
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.2e-25 120.2 101 66.3
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.2e-25 120.2 101 65.3
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.6e-25 119.8 100 65.0
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-25 119.8 101 66.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 2.1e-25 119.4 101 64.4
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 2.1e-25 119.4 103 65.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.1e-25 119.4 101 65.3
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.1e-25 119.4 101 66.3
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.7e-25 119.0 101 65.3
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.7e-25 119.0 101 65.3
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.6e-25 118.6 101 66.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.6e-25 118.6 101 66.3
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.7e-25 118.2 101 66.3
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 4.7e-25 118.2 99 67.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.7e-25 118.2 97 67.0
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 6.1e-25 117.9 101 65.3
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.9e-25 117.5 110 61.8
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-24 117.1 100 64.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.4e-24 116.7 110 62.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.8e-24 116.3 99 64.6
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.3e-24 115.9 99 64.6
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.3e-24 115.9 99 65.7
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.3e-24 115.9 101 63.4
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.0e-24 115.5 99 64.6
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.0e-24 115.5 99 64.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 3.0e-24 115.5 99 64.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.9e-24 115.2 101 65.3
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-24 115.2 99 66.7
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 5.1e-24 114.8 97 64.9
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.1e-24 114.8 101 65.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.1e-24 114.8 101 63.4
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.1e-24 114.8 101 64.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 8.8e-24 114.0 101 63.4
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.0e-23 112.8 101 62.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.6e-23 112.5 101 61.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-23 112.1 99 62.6
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.4e-23 111.7 101 60.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.7e-23 111.3 101 62.4
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 5.7e-23 111.3 101 61.4
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 9.7e-23 110.5 101 60.4
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.3e-22 110.2 135 50.4
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.3e-22 110.2 98 62.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.7e-22 109.8 101 61.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.3e-22 107.8 97 63.9
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.8e-21 106.3 144 47.2
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 3.4e-20 102.1 161 42.2
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.3e-19 100.1 75 76.0
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 1.3e-19 100.1 101 53.5
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.2e-19 99.4 101 56.4
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.8e-19 98.6 145 45.5
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 8.5e-19 97.4 101 52.5
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.9e-18 96.3 102 51.0
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 3.6e-17 92.0 78 62.8
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 6.1e-17 91.3 102 49.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.4e-16 90.1 101 49.5
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.9e-16 88.6 76 63.2
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 8.8e-16 87.4 76 61.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-15 86.3 76 63.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.7e-15 84.7 85 56.5
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.4e-13 80.1 72 58.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.6e-12 76.6 65 63.1
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 2.6e-12 75.9 81 53.1
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.5e-12 75.5 65 58.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.9e-12 74.7 65 58.5
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 5.9e-12 74.7 97 41.2
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 5.9e-12 74.7 93 49.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.7e-11 73.2 57 66.7
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 9.4e-10 67.4 100 38.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.0e-08 63.9 102 36.3
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.2e-08 61.6 111 42.3
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.2e-08 61.6 126 38.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-08 61.2 111 41.4
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-08 61.2 111 41.4
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-08 61.2 111 41.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.6e-07 59.3 57 61.4
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.6e-07 59.3 111 40.5
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.2e-06 56.2 102 30.4
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-06 56.2 69 49.3
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 6.3e-06 54.7 38 81.6


User provided reference genes

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