Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.1e-50 202.2 111 100.0
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.1e-49 197.6 111 96.4
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.1e-49 197.6 111 96.4
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 6.6e-49 197.2 111 96.4
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 2.8e-47 191.8 111 92.8
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 2.8e-47 191.8 111 92.8
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 4.7e-47 191.0 111 92.8
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 6.2e-47 190.7 111 92.8
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.4e-46 189.5 111 91.9
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 1.8e-46 189.1 111 91.9
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 3.1e-46 188.3 111 91.9
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 4.0e-46 188.0 111 93.7
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 1.2e-45 186.4 111 91.0
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.5e-45 186.0 111 92.8
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 89.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 89.2
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 90.1
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 91.9
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 89.2
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 5.8e-45 184.1 109 90.8
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 5.8e-45 184.1 112 93.8
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 7.6e-45 183.7 112 92.0
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 9.9e-45 183.3 112 91.1
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 9.9e-45 183.3 111 88.3
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 91.9
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 91.0
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 2.2e-44 182.2 109 92.7
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 91.0
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 90.1
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 4.9e-44 181.0 111 90.1
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 6.4e-44 180.6 111 88.3
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 90.2
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 91.1
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.4e-43 179.5 109 90.8
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.9e-43 179.1 110 90.0
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.4e-43 178.7 109 89.0
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 4.2e-43 177.9 113 88.5
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.2e-43 177.9 112 87.5
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 89.2
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 89.2
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 89.2
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 7.1e-43 177.2 133 77.4
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 7.1e-43 177.2 109 86.2
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 86.5
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.6e-42 176.0 111 87.4
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 90.2
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.1e-42 175.6 109 89.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.1e-42 175.6 127 78.7
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 88.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 88.3
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.7e-42 175.3 109 89.0
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.5e-42 174.9 111 87.4
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 6.0e-42 174.1 111 87.4
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 7.8e-42 173.7 104 93.3
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.3e-41 172.9 111 87.4
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.7e-41 172.6 109 86.2
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 85.6
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 85.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 2.3e-41 172.2 111 85.6
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 86.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 87.4
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 3.9e-41 171.4 112 86.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 86.5
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 86.5
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.1e-40 169.9 109 83.5
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 87.5
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 84.7
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 2.5e-40 168.7 112 84.8
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 83.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 83.9
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 87.4
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 84.8
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 84.8
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 4.3e-40 167.9 112 84.8
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 81.1
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 85.6
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.1e-39 165.6 109 83.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 84.7
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 84.7
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 82.1
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.1e-38 163.3 99 91.9
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.4e-38 162.9 103 84.5
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.8e-38 162.5 111 82.9
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 82.0
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 83.8
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.0e-38 161.4 110 84.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 9.0e-38 160.2 105 80.0
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 83.0
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 80.9
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 83.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 3.4e-37 158.3 110 81.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 4.5e-37 157.9 100 85.0
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 7.6e-37 157.1 110 80.9
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 9.9e-37 156.8 110 80.9
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.9
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.8e-36 154.8 110 80.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.9e-36 154.5 99 87.9
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 79.1
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 79.1
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 79.1
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 79.1
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 6.4e-36 154.1 110 80.0
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 8.4e-36 153.7 110 79.1
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 78.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.9e-35 152.5 113 77.9
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 2.4e-35 152.1 111 79.3
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 3.2e-35 151.8 112 75.0
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 4.2e-35 151.4 109 78.9
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 5.4e-35 151.0 110 77.3
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.2e-34 149.8 110 78.2
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-34 149.8 112 76.8
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.2e-34 149.8 112 80.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 75.7
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 2.1e-34 149.1 111 78.4
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 6.0e-34 147.5 111 74.8
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.1e-32 143.3 111 74.8
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.3e-32 141.7 108 74.1
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.3e-31 139.8 106 70.8
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 6.2e-31 137.5 98 79.6
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.4e-30 135.6 182 53.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.0e-30 134.8 111 72.1
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.3e-28 129.8 108 68.5
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 2.9e-28 128.6 83 88.0
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.8e-28 128.3 111 70.3
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 8.4e-28 127.1 102 73.5
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.4e-27 126.3 96 74.0
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 2.1e-26 122.5 96 68.8
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 7.4e-24 114.0 110 64.5
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.9e-22 107.5 68 88.2
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.0e-20 103.6 62 90.3
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 3.0e-17 92.0 92 59.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.1e-16 90.1 57 82.5
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 7.4e-16 87.4 109 50.5
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.6e-15 86.3 50 92.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 1.8e-14 82.8 60 80.0
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 3.1e-14 82.0 62 74.2
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.5e-13 79.7 62 75.8
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.3e-12 76.6 57 75.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 4.2e-11 71.6 52 78.8
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 8.2e-07 57.4 110 40.0


User provided reference genes

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