Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 0.0e+00 1389.0 681 100.0
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 0.0e+00 1230.3 686 90.2
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 0.0e+00 1145.2 683 84.5
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 0.0e+00 1096.6 684 81.3
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.9e-309 1064.3 683 79.5
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 3.6e-307 1057.7 670 79.6
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.3e-301 1039.3 676 78.1
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.8e-298 1028.9 676 76.9
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 1.4e-295 1019.2 684 76.2
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.7e-294 1015.0 684 76.0
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 3.0e-293 1011.5 681 76.5
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 1.3e-288 996.1 712 73.2
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 3.1e-258 895.2 669 67.9
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 2.6e-252 875.5 682 66.1
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 9.8e-252 873.6 671 66.5
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.4e-250 869.8 664 66.7
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 1.6e-249 866.3 672 65.9
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 4.2e-247 858.2 657 67.1
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.4e-245 853.2 676 64.2
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 1.3e-243 846.7 675 64.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.8e-243 845.5 675 64.0
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 8.3e-243 844.0 678 65.3
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.2e-241 840.1 626 67.9
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 3.3e-239 832.0 663 64.7
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 2.8e-238 828.9 675 61.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.8e-238 828.9 677 63.5
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 4.4e-236 821.6 665 63.3
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 4.9e-235 818.1 675 63.1
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.3e-235 817.4 679 63.2
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.0e-233 812.8 680 63.1
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 5.0e-232 808.1 682 59.1
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 2.1e-230 802.7 655 62.1
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 2.8e-230 802.4 659 62.4
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 3.6e-230 802.0 697 60.4
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 1.0e-229 800.4 676 60.9
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.4e-229 800.0 743 58.8
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.4e-229 800.0 670 61.9
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 3.1e-229 798.9 665 62.7
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 1.5e-228 796.6 679 63.3
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 1.5e-228 796.6 667 61.3
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 1.5e-228 796.6 655 62.3
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 2.0e-228 796.2 674 62.8
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 4.4e-228 795.0 676 61.1
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 7.5e-228 794.3 672 60.7
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.9e-227 792.3 670 61.8
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.9e-227 792.3 657 62.3
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 4.9e-227 791.6 676 60.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.2e-226 788.9 672 61.0
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 4.1e-226 788.5 664 61.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 7.0e-226 787.7 668 59.6
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 9.2e-226 787.3 655 63.5
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 6.0e-225 784.6 704 57.8
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.5e-223 780.0 675 60.1
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 5.6e-223 778.1 677 61.0
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 3.1e-221 772.3 670 60.0
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.2e-220 770.4 754 53.8
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 1.2e-220 770.4 675 59.9
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 5.4e-218 761.5 671 59.5
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 6.0e-217 758.1 682 58.7
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 5.1e-216 755.0 660 61.1
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 6.6e-216 754.6 659 59.2
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 1.1e-215 753.8 678 59.6
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 8.9e-213 744.2 668 57.0
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 4.4e-212 741.9 666 58.3
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 6.0e-209 731.5 671 56.9
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 1.5e-207 726.9 712 54.5
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 5.6e-207 724.9 677 56.7
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 4.7e-206 721.8 686 55.2
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 4.0e-205 718.8 675 56.0
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 1.2e-204 717.2 679 56.4
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 3.4e-204 715.7 679 55.8
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.1e-202 710.7 680 55.6
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 3.2e-202 709.1 674 55.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.4e-202 708.4 680 55.4
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 5.4e-202 708.4 516 68.2
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.6e-201 706.8 675 56.1
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 6.0e-201 704.9 675 55.4
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 1.0e-200 704.1 675 55.4
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 2.5e-199 699.5 674 55.6
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 2.0e-196 689.9 667 55.0
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 5.8e-196 688.3 535 67.3
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.4e-194 682.9 687 56.5
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.5e-191 672.9 672 54.6
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 5.3e-189 665.2 656 54.0
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 5.8e-188 661.8 667 55.9
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.4e-186 656.4 524 64.3
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 5.1e-184 648.7 479 69.9
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 2.4e-181 639.8 670 52.8
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 1.8e-176 623.6 655 53.0
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 5.9e-172 608.6 659 52.5
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.1e-165 587.8 527 60.0
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 6.7e-160 568.5 523 59.5
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 4.3e-159 565.8 668 47.5
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 3.0e-144 516.5 629 46.7
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.1e-138 498.0 657 44.3
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 1.3e-131 474.6 410 60.0
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.8e-117 427.6 655 39.1
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.8e-112 411.0 665 37.3
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 7.5e-103 379.0 398 53.5
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.5e-98 364.8 636 39.3
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 6.0e-92 342.8 240 72.5
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.9e-76 289.3 467 39.2
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.4e-71 273.9 543 37.0
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-48 198.4 239 46.0
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.6e-44 185.3 176 53.4
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.6e-39 167.9 147 59.2
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 7.2e-37 159.8 407 31.7
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.7e-36 157.1 99 72.7
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.5e-31 141.0 236 38.1
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 7.2e-29 133.3 87 73.6
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.7e-25 122.1 94 62.8
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 1.8e-24 118.6 221 35.3
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 7.7e-23 113.2 114 51.8
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 6.5e-22 110.2 110 50.9
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.7e-14 85.5 65 60.0
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 2.3e-14 85.1 74 59.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 3.2e-13 81.3 66 60.6
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.4e-11 75.9 81 54.3
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 3.0e-11 74.7 100 43.0
Glyma.14G110000 Glycine max HOM05D006559 ORTHO05D214058 7.5e-10 70.1 35 91.4


User provided reference genes

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