Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 7.9e-77 291.2 156 100.0
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 4.3e-75 285.4 156 98.1
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 1.2e-69 267.3 153 94.8
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.3e-68 263.1 157 90.4
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 3.9e-68 262.3 154 92.9
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 1.5e-67 260.4 156 89.1
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 2.4e-65 253.1 150 92.0
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 1.3e-63 247.3 156 86.5
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 2.2e-63 246.5 143 91.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.9e-63 246.1 154 87.0
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 1.9e-62 243.4 154 86.4
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 1.2e-61 240.7 140 91.4
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.6e-61 240.4 154 85.1
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 2.7e-61 239.6 154 83.8
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.7e-61 239.6 153 84.3
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 3.6e-61 239.2 151 84.1
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 6.1e-61 238.4 154 83.1
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 2.3e-60 236.5 154 83.8
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 3.9e-60 235.7 154 83.1
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 6.7e-60 235.0 157 84.7
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 6.7e-60 235.0 142 88.0
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 6.7e-60 235.0 151 84.8
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 8.8e-60 234.6 152 84.2
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 8.8e-60 234.6 150 84.7
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 1.1e-59 234.2 151 84.8
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 1.5e-59 233.8 133 93.2
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.5e-59 233.8 151 84.8
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.0e-59 233.4 149 85.9
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.0e-59 233.4 149 85.9
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.0e-59 233.4 150 84.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 2.6e-59 233.0 158 80.4
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 2.6e-59 233.0 151 85.4
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 4.4e-59 232.3 156 82.1
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 5.7e-59 231.9 152 82.9
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.7e-59 231.9 151 83.4
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 7.4e-59 231.5 142 86.6
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.4e-59 231.5 151 81.5
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 9.7e-59 231.1 151 81.5
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 9.7e-59 231.1 151 83.4
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 2.2e-58 229.9 159 79.9
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 2.8e-58 229.6 151 83.4
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.7e-58 229.2 151 82.8
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 3.7e-58 229.2 142 86.6
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 4.8e-58 228.8 151 83.4
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 4.8e-58 228.8 148 83.8
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 6.3e-58 228.4 151 82.8
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 6.3e-58 228.4 142 86.6
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 1.4e-57 227.3 151 83.4
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 1.4e-57 227.3 147 85.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 1.4e-57 227.3 150 80.0
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.1e-57 226.1 142 83.1
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 3.1e-57 226.1 146 85.6
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 3.1e-57 226.1 160 80.6
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 5.3e-57 225.3 156 78.2
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 6.9e-57 224.9 133 91.7
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 9.1e-57 224.6 148 80.4
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 9.1e-57 224.6 133 91.7
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 9.1e-57 224.6 142 83.1
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 9.1e-57 224.6 142 83.1
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 9.1e-57 224.6 153 80.4
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 1.2e-56 224.2 154 79.9
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 1.2e-56 224.2 152 82.2
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.2e-56 224.2 150 80.0
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.5e-56 223.8 146 81.5
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.5e-56 223.8 150 82.0
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 1.5e-56 223.8 146 80.8
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.0e-56 223.4 151 81.5
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.0e-56 223.4 150 80.7
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.6e-56 223.0 146 84.9
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 3.4e-56 222.6 154 79.2
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 3.4e-56 222.6 152 81.6
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.4e-56 222.6 152 81.6
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 4.5e-56 222.2 154 81.2
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 4.5e-56 222.2 155 81.3
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 7.7e-56 221.5 151 79.5
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.3e-55 220.7 156 77.6
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 2.2e-55 219.9 135 90.4
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 6.5e-55 218.4 153 79.7
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 6.5e-55 218.4 156 76.9
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 8.5e-55 218.0 133 88.7
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 1.1e-54 217.6 152 78.3
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 1.4e-54 217.2 152 77.6
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 1.9e-54 216.9 150 78.7
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.9e-54 216.9 138 86.2
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 1.9e-54 216.9 130 90.8
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.5e-54 216.5 156 76.3
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 3.2e-54 216.1 155 79.4
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 4.2e-54 215.7 152 76.3
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 5.5e-54 215.3 132 89.4
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 5.5e-54 215.3 150 80.0
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 5.5e-54 215.3 150 80.0
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 9.4e-54 214.5 157 77.1
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 9.4e-54 214.5 151 77.5
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 9.4e-54 214.5 152 77.6
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.6e-53 213.8 153 78.4
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.6e-53 213.8 155 74.2
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.1e-53 213.4 155 77.4
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 2.1e-53 213.4 155 77.4
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.7e-53 213.0 162 75.3
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.6e-53 212.6 152 76.3
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 3.6e-53 212.6 155 76.1
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 3.6e-53 212.6 154 77.3
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 4.7e-53 212.2 151 77.5
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 4.7e-53 212.2 155 78.7
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 4.7e-53 212.2 155 78.7
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 4.7e-53 212.2 155 78.7
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 4.7e-53 212.2 155 78.1
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 6.1e-53 211.8 150 76.7
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 1.4e-52 210.7 145 80.7
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.8e-52 210.3 155 73.5
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 2.3e-52 209.9 150 79.3
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.5e-51 207.2 150 78.7
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 2.0e-51 206.8 156 75.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 2.6e-51 206.5 156 75.0
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 2.6e-51 206.5 145 78.6
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 2.6e-51 206.5 156 75.0
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 2.6e-51 206.5 145 78.6
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.6e-51 206.5 163 74.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 3.3e-51 206.1 147 77.6
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 4.4e-51 205.7 164 73.8
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 5.7e-51 205.3 154 76.6
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.3e-50 204.1 147 76.9
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.3e-50 204.1 151 77.5
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.8e-50 203.0 143 76.9
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 1.1e-49 201.1 147 78.2
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 7.0e-49 198.4 149 73.2
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 1.7e-47 193.7 149 71.8
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 2.2e-47 193.4 151 73.5
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.8e-47 192.6 148 77.0
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.8e-47 192.6 135 80.0
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 3.2e-46 189.5 149 72.5
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.2e-45 187.6 133 75.9
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 3.3e-43 179.5 166 66.3
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.7e-42 176.0 152 65.1
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.7e-40 169.9 130 70.0
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 8.5e-39 164.9 114 80.7
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 4.2e-38 162.5 121 78.5
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 6.3e-34 148.7 159 60.4
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 4.1e-33 146.0 133 63.9
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.7e-31 140.6 127 61.4
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 6.5e-31 138.7 108 70.4
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 8.6e-31 138.3 109 68.8
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.5e-30 137.5 84 95.2
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.2e-27 127.9 112 66.1
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.0e-23 114.8 107 60.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 5.0e-23 112.5 140 51.4
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 1.9e-22 110.5 77 66.2
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 3.3e-22 109.8 140 50.7
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 5.6e-22 109.0 72 86.1
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 5.6e-22 109.0 72 86.1
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 2.3e-20 103.6 158 50.0
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.3e-20 103.6 86 70.9
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.7e-16 90.1 72 73.6
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.0e-16 89.0 66 84.8
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 8.6e-15 85.1 64 81.2
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 1.7e-07 60.8 59 47.5
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 4.3e-06 56.2 41 73.2


User provided reference genes

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