Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 3.0e-137 491.9 254 100.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 9.0e-118 427.2 258 86.4
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 5.1e-113 411.4 258 82.9
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.7e-98 362.5 263 72.6
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 9.7e-96 354.0 262 71.8
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 1.1e-94 350.5 264 71.2
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 2.4e-94 349.4 265 69.8
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.1e-94 348.6 258 70.5
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 6.9e-94 347.8 263 68.8
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.9e-92 342.4 268 67.5
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 3.8e-92 342.0 263 68.4
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 6.5e-92 341.3 265 67.5
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.9e-91 339.7 264 69.7
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.5e-91 339.3 269 66.2
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.5e-91 339.3 269 66.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 9.4e-91 337.4 263 67.3
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.6e-88 329.3 263 66.2
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.4e-86 323.6 264 65.9
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.7e-84 316.6 254 65.7
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.1e-83 313.9 266 65.0
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.6e-82 310.1 263 63.1
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.6e-82 310.1 240 66.2
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 4.7e-82 308.5 261 63.6
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 8.0e-82 307.8 244 65.6
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 5.2e-81 305.1 244 65.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.2e-81 305.1 263 62.0
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 9.7e-80 300.8 264 60.2
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.7e-79 300.1 264 59.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.7e-79 300.1 240 65.8
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 6.3e-79 298.1 243 67.5
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 8.2e-79 297.7 255 61.6
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 8.2e-79 297.7 244 66.8
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.4e-78 296.2 243 67.1
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-78 296.2 258 60.9
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 2.4e-78 296.2 257 61.9
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 3.1e-78 295.8 255 61.2
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 5.3e-78 295.0 242 65.3
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.2e-77 293.9 243 62.1
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.2e-77 293.9 256 60.9
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.6e-77 293.5 258 62.4
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.6e-77 293.5 264 62.1
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.0e-77 293.1 262 57.6
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 2.7e-77 292.7 263 63.5
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.9e-76 289.3 261 61.3
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.8e-76 288.9 240 60.4
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 6.5e-76 288.1 263 57.4
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.9e-75 286.6 263 58.9
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 9.4e-75 284.3 240 62.5
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.2e-74 283.9 242 63.2
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.6e-74 282.3 237 61.6
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.6e-74 282.3 237 61.6
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.6e-74 282.3 259 56.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 6.1e-74 281.6 259 61.0
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.3e-73 279.6 252 59.9
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.5e-72 276.9 242 62.4
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 2.0e-72 276.6 243 59.3
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.6e-72 276.2 240 59.2
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 4.4e-72 275.4 238 64.7
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 7.5e-72 274.6 238 63.0
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 7.5e-72 274.6 241 62.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 7.5e-72 274.6 238 63.0
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 7.5e-72 274.6 241 62.7
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 7.5e-72 274.6 241 61.8
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 9.8e-72 274.2 241 61.0
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 9.8e-72 274.2 242 62.4
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.7e-71 273.5 241 62.2
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 2.2e-71 273.1 238 62.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 3.7e-71 272.3 230 63.5
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 4.8e-71 271.9 230 61.7
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 6.3e-71 271.6 241 61.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 8.3e-71 271.2 255 58.0
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.4e-70 270.4 248 58.1
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 2.4e-70 269.6 242 57.4
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 3.1e-70 269.2 240 60.4
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 3.1e-70 269.2 241 61.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.4e-70 268.5 205 70.2
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 7.0e-70 268.1 240 60.4
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 9.1e-70 267.7 247 58.3
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.6e-69 266.9 242 57.0
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 2.7e-69 266.2 241 60.2
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.5e-69 265.8 241 60.6
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 5.9e-69 265.0 224 62.9
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 5.9e-69 265.0 264 54.9
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 1.3e-68 263.8 241 60.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.7e-68 263.5 240 60.0
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.2e-68 263.1 256 57.0
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.9e-68 262.7 240 60.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 8.5e-68 261.2 227 61.2
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 8.5e-68 261.2 224 59.8
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 8.5e-68 261.2 229 60.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.1e-67 260.8 239 59.8
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.5e-67 260.4 244 59.0
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.2e-67 259.2 245 61.2
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.2e-67 259.2 241 59.3
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.2e-67 258.8 241 59.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 5.5e-67 258.5 248 60.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 7.2e-67 258.1 225 60.4
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.2e-66 257.3 239 58.6
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-66 256.9 210 65.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.6e-66 256.9 240 58.8
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.1e-66 256.5 245 54.3
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.1e-66 255.0 244 57.0
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 6.1e-66 255.0 225 57.8
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 8.0e-66 254.6 244 55.3
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.4e-65 253.8 227 59.9
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.4e-65 253.8 255 55.7
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.2e-64 250.8 239 58.6
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.6e-64 249.6 249 56.6
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 8.3e-63 244.6 254 55.5
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.6e-61 240.4 240 55.4
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.6e-58 230.3 258 50.0
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 3.6e-58 229.2 231 55.8
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 3.6e-58 229.2 241 53.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 2.3e-57 226.5 229 53.7
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 3.5e-53 212.6 225 54.7
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.6e-53 212.2 197 62.9
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 9.5e-51 204.5 244 48.4
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 4.4e-48 195.7 243 45.7
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 6.6e-44 181.8 232 44.0
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.5e-43 179.9 239 48.5
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 9.5e-43 177.9 143 61.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 8.3e-39 164.9 134 62.7
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.7e-36 157.1 213 41.8
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.2e-34 151.0 137 55.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 1.6e-34 150.6 229 40.2
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.3e-33 146.7 183 46.4
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.5e-32 144.1 181 50.3
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.3e-31 141.0 140 54.3
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.3e-31 141.0 235 34.9
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-31 140.2 185 48.1
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 5.4e-30 135.6 216 38.4
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 7.1e-30 135.2 241 34.9
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 6.0e-29 132.1 232 37.1
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.0e-28 131.3 149 46.3
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.3e-27 126.3 241 32.8
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.2e-26 122.1 157 47.8
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-14 84.3 77 62.3
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 3.2e-14 83.2 84 52.4
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.9e-11 73.9 177 32.8
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 1.5e-08 64.3 73 52.1
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.5e-08 64.3 73 52.1
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 4.5e-08 62.8 142 33.1
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 2.2e-07 60.5 62 58.1
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 1.4e-06 57.8 62 58.1
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 4.2e-06 56.2 91 37.4


User provided reference genes

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