Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 1.0e-82 310.1 160 100.0
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 7.5e-62 240.7 160 79.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 5.1e-58 228.0 160 75.6
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 3.2e-52 208.8 156 71.2
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 1.4e-36 156.8 165 58.2
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-36 156.4 200 50.5
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 1.9e-36 156.4 200 50.5
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 1.0e-34 150.6 177 56.5
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 5.1e-34 148.3 165 57.6
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 1.9e-33 146.4 163 57.7
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 4.3e-33 145.2 198 49.0
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 9.6e-33 144.1 200 48.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.6e-32 143.3 201 48.3
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 2.1e-32 142.9 208 47.6
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 4.8e-32 141.7 208 47.1
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 2.4e-31 139.4 202 45.0
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 3.1e-31 139.0 205 45.9
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 3.1e-31 139.0 206 47.1
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 3.1e-31 139.0 164 56.1
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 4.5e-30 135.2 201 45.3
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.8e-30 134.8 207 45.4
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 7.6e-30 134.4 211 45.5
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.7e-29 133.3 205 45.4
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 1.7e-29 133.3 209 45.5
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 2.9e-29 132.5 207 44.4
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 3.8e-29 132.1 212 45.3
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 8.4e-29 131.0 208 43.8
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 5.4e-28 128.3 195 46.2
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.6e-27 126.7 219 43.8
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 2.1e-27 126.3 219 43.8
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 2.1e-27 126.3 206 44.2
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 6.0e-27 124.8 198 46.0
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 7.9e-27 124.4 183 44.3
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 3.0e-26 122.5 218 44.0
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.9e-26 122.1 177 48.6
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 5.1e-26 121.7 206 42.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.7e-26 120.9 206 42.2
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.5e-25 120.2 206 42.2
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 9.6e-25 117.5 176 47.7
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.6e-24 116.7 186 44.6
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 2.8e-24 115.9 204 41.7
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 4.8e-24 115.2 202 41.6
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 8.1e-24 114.4 217 37.8
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 2.4e-23 112.8 197 45.7
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 4.0e-23 112.1 201 40.3
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 1.2e-22 110.5 191 47.1
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-22 110.5 191 47.1
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-22 110.5 191 47.1
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 1.2e-22 110.5 209 38.3
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 3.4e-22 109.0 203 44.3
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 7.6e-22 107.8 224 38.4
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.3e-21 107.1 195 36.9
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 1.7e-21 106.7 202 41.1
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 1.7e-21 106.7 163 49.1
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 1.7e-21 106.7 196 42.9
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 1.7e-21 106.7 208 40.4
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 2.2e-21 106.3 203 39.4
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.9e-21 105.9 216 38.4
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 3.8e-21 105.5 219 41.6
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.9e-21 105.1 216 38.4
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 8.4e-21 104.4 218 38.1
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.1e-20 104.0 193 44.6
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.5e-20 102.8 201 37.3
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 3.2e-20 102.4 207 38.2
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 3.2e-20 102.4 192 44.8
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 4.2e-20 102.1 174 44.3
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.5e-20 101.7 207 40.1
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 5.5e-20 101.7 192 42.2
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 7.1e-20 101.3 207 40.1
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 7.1e-20 101.3 220 37.3
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 6.0e-19 98.2 191 42.4
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 6.0e-19 98.2 191 42.4
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 6.0e-19 98.2 184 40.2
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 1.0e-18 97.4 165 44.2
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.0e-18 97.4 223 36.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 1.8e-18 96.7 204 35.3
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 2.3e-18 96.3 193 43.0
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 1.5e-17 93.6 180 41.7
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 1.9e-17 93.2 234 33.3
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 3.3e-17 92.4 217 35.9
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 2.8e-16 89.4 178 37.6
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 1.4e-15 87.0 212 34.4
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 1.8e-15 86.7 183 37.7
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 1.8e-15 86.7 208 34.1
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 4.0e-15 85.5 216 33.8
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 4.0e-15 85.5 160 41.2
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 5.3e-15 85.1 176 36.4
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 5.3e-15 85.1 219 33.8
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 9.0e-15 84.3 197 37.6
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.5e-14 83.6 224 33.9
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 3.4e-14 82.4 167 37.7
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 4.5e-14 82.0 177 36.7
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 4.5e-14 82.0 232 33.6
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 5.8e-14 81.6 164 36.0
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 5.8e-14 81.6 164 36.0
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 5.8e-14 81.6 198 38.9
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.8e-14 81.6 201 37.3
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.8e-14 81.6 201 37.8
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 5.8e-14 81.6 180 37.8
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 7.6e-14 81.3 164 38.4
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 7.6e-14 81.3 164 38.4
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.6e-14 81.3 216 31.0
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 1.0e-13 80.9 176 36.4
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 2.2e-13 79.7 164 38.4
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 2.2e-13 79.7 220 34.1
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 2.9e-13 79.3 132 43.2
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.9e-13 79.3 210 34.8
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 4.9e-13 78.6 165 37.0
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.1e-12 77.4 164 39.0
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 1.9e-12 76.6 168 36.9
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 3.2e-12 75.9 230 32.2
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 4.2e-12 75.5 220 32.3
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 4.2e-12 75.5 231 32.0
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 4.2e-12 75.5 198 34.8
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 7.1e-12 74.7 164 36.6
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 9.3e-12 74.3 172 34.3
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 1.6e-11 73.6 255 31.8
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 2.7e-11 72.8 202 34.2
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.0e-10 70.9 51 70.6
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 3.0e-10 69.3 81 51.9
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 6.7e-10 68.2 190 34.2
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.1e-09 67.4 50 70.0
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.9e-09 66.6 162 33.3
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 3.3e-09 65.9 86 50.0
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 4.3e-09 65.5 95 44.2
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 9.7e-09 64.3 56 64.3
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.3e-08 63.9 179 33.5
Peaxi162Scf00095g00034 Petunia axillaris HOM05D001921 ORTHO05D001784 1.3e-08 63.9 182 33.5
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 2.8e-08 62.8 206 34.0
SEGI_33680 Sequoiadendron giganteum HOM05D001921 ORTHO05D001784 1.8e-07 60.1 84 46.4
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.9e-07 58.2 184 27.7
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 2.0e-06 56.6 180 30.0
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 2.6e-06 56.2 184 27.2
SalBow5G1185 Salvia bowleyana HOM05D001921 ORTHO05D001784 3.4e-06 55.8 181 30.9
SalBow5G3126 Salvia bowleyana HOM05D001921 ORTHO05D001784 3.4e-06 55.8 181 30.9
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 4.5e-06 55.5 184 28.3
Gohir.D06G102300 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.5e-06 55.5 182 26.9
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 5.9e-06 55.1 187 29.4
Duzib168G1630 Durio zibethinus HOM05D001921 ORTHO05D001784 1.0e-05 54.3 48 56.2
Duzib187G0974 Durio zibethinus HOM05D001921 ORTHO05D001784 1.0e-05 54.3 64 40.6
Lsat_1_v5_gn_5_51861 Lactuca sativa HOM05D001921 ORTHO05D001784 1.0e-05 54.3 53 60.4


User provided reference genes

Program Settings