Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 8.7e-193 676.8 338 100.0
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 5.5e-187 657.5 339 97.1
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.6e-170 602.8 345 88.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 3.6e-170 601.7 344 88.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.0e-169 598.6 343 88.6
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.2e-165 586.6 348 85.3
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 4.5e-165 584.7 345 85.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 7.7e-165 583.9 345 85.2
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.7e-164 582.8 346 85.0
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.7e-162 575.5 308 91.6
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.6e-162 575.1 330 86.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 4.2e-155 551.6 337 82.2
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.6e-154 549.7 337 81.3
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.7e-153 544.3 344 79.1
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 2.0e-152 542.7 327 82.6
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.0e-152 542.7 344 79.1
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 9.7e-152 540.4 345 78.0
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 9.7e-152 540.4 340 80.6
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 9.7e-152 540.4 340 80.6
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.3e-151 540.0 326 81.9
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.3e-151 540.0 324 81.5
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.8e-151 538.9 342 79.5
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.8e-151 538.1 324 80.9
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.1e-150 537.0 344 79.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-150 536.6 341 78.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.8e-150 536.2 344 79.1
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.8e-150 536.2 322 82.6
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.4e-150 535.8 325 80.6
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 3.1e-150 535.4 348 77.6
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 5.3e-150 534.6 340 80.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.0e-150 534.3 336 80.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.6e-149 533.1 325 80.6
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.5e-149 531.9 326 80.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 4.5e-149 531.6 336 78.3
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 4.5e-149 531.6 347 78.1
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 7.7e-149 530.8 341 78.0
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.7e-148 529.6 327 80.1
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 8.5e-148 527.3 325 80.9
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.5e-147 526.6 341 78.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.5e-147 526.6 338 80.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 2.5e-147 525.8 306 83.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.6e-146 523.1 345 76.8
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.1e-146 521.2 348 75.0
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 8.0e-146 520.8 318 81.8
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.4e-145 520.0 328 79.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.8e-145 519.6 358 75.7
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 2.3e-145 519.2 308 81.8
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.0e-145 518.8 341 76.2
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 6.7e-145 517.7 308 81.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 8.8e-145 517.3 351 76.1
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 8.8e-145 517.3 330 78.2
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.2e-144 516.9 359 73.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 7.5e-144 514.2 348 75.3
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 9.7e-144 513.8 325 78.5
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.3e-143 513.5 326 78.8
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.7e-143 513.1 328 78.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.7e-143 513.1 331 77.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.7e-143 513.1 326 78.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.7e-143 513.1 336 77.7
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.8e-143 512.3 328 78.4
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 4.8e-143 511.5 324 78.4
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 4.8e-143 511.5 328 78.4
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 6.3e-143 511.1 328 78.7
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 2.4e-142 509.2 328 78.0
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.1e-142 508.8 325 77.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 4.1e-142 508.4 326 77.3
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 5.3e-142 508.1 331 76.4
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 9.1e-142 507.3 325 78.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.2e-141 506.9 337 76.6
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-141 506.5 328 78.0
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.6e-141 506.5 325 77.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.7e-141 505.8 352 73.3
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.7e-141 505.8 352 73.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 3.5e-141 505.4 326 77.0
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 4.5e-141 505.0 293 82.3
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 3.8e-140 501.9 402 65.9
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.1e-139 500.4 340 76.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.5e-139 500.0 376 68.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 5.5e-139 498.0 333 75.7
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 7.2e-139 497.7 332 75.3
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.2e-138 496.9 332 74.4
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.6e-138 496.5 306 79.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.7e-138 495.7 341 74.2
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.0e-137 493.8 324 74.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 1.8e-137 493.0 343 73.5
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 6.8e-137 491.1 319 78.1
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 6.8e-137 491.1 291 81.4
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 3.4e-136 488.8 332 75.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.7e-136 488.0 324 75.6
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.5e-136 487.6 284 81.7
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 9.8e-136 487.3 335 74.6
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.7e-135 486.5 357 69.7
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.1e-134 481.9 337 70.9
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 2.7e-133 479.2 268 85.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.5e-133 478.8 345 69.6
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 4.5e-133 478.4 314 77.7
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 5.9e-133 478.0 310 74.5
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.0e-132 477.2 344 73.0
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.1e-131 473.8 324 74.4
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.6e-130 469.9 325 71.7
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 4.0e-129 465.3 272 82.0
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.2e-127 459.5 339 70.2
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.3e-127 458.0 354 69.8
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 3.1e-126 455.7 270 81.1
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 1.5e-123 446.8 306 74.2
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 2.1e-122 443.0 317 72.2
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.5e-120 436.8 298 75.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 8.3e-119 431.0 298 74.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.1e-118 428.7 329 69.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 2.5e-115 419.5 287 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 4.3e-115 418.7 337 62.9
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.8e-113 411.4 291 72.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 6.8e-113 411.4 317 62.8
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.3e-111 407.1 272 71.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 8.3e-111 404.4 278 74.5
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 7.8e-109 397.9 232 89.2
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.5e-107 391.0 260 75.8
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 8.9e-105 384.4 290 69.0
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 2.0e-104 383.3 268 72.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.1e-98 363.2 313 61.3
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.7e-92 343.6 228 75.9
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 7.6e-88 328.2 218 77.5
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.4e-65 253.4 337 47.5
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.5e-63 245.4 139 82.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.5e-62 242.3 153 73.9
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.7e-61 240.0 182 67.6
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.5e-59 234.2 139 82.7
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.2e-56 224.6 108 96.3
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.2e-54 216.1 150 74.7
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 5.5e-54 215.7 132 76.5
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-48 198.0 108 82.4
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.2e-39 167.2 129 60.5
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 6.5e-39 165.6 283 42.0
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.1e-37 159.1 112 68.8
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 8.2e-34 148.7 310 33.5
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-31 141.4 117 61.5
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 5.2e-28 129.4 180 46.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 5.3e-25 119.4 86 68.6
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 3.2e-22 110.2 287 31.0
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 9.4e-22 108.6 87 58.6
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.8e-20 104.4 71 70.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.4e-17 94.7 52 84.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.4e-17 94.7 53 79.2
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-17 94.0 92 56.5
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 3.1e-17 93.6 93 57.0
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 7.0e-17 92.4 53 86.8
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 4.5e-16 89.7 79 53.2
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 7.7e-16 89.0 53 77.4
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 9.8e-11 72.0 40 77.5
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 2.4e-09 67.4 55 65.5
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 6.6e-07 59.3 35 80.0
arahy.Tifrunner.gnm1.ann1.8K4VEX Arachis hypogaea HOM05D000217 ORTHO05D000121 4.3e-06 56.6 58 60.3
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 7.3e-06 55.8 29 75.9
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.5e-06 55.5 31 80.6


User provided reference genes

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