Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 4.2e-86 321.2 152 100.0
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 3.9e-84 314.7 152 98.0
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 2.1e-82 308.9 152 96.1
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 1.5e-75 286.2 152 91.4
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 7.6e-72 273.9 156 85.3
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 2.5e-70 268.9 152 85.5
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 1.0e-68 263.5 153 79.7
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.3e-68 262.3 151 80.8
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 3.9e-68 261.5 151 82.8
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 8.7e-68 260.4 152 83.6
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 2.5e-67 258.8 150 80.0
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 5.7e-67 257.7 150 79.3
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.3e-66 256.5 147 81.6
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 2.8e-66 255.4 152 79.6
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.8e-66 255.4 152 79.6
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 3.7e-66 255.0 152 80.3
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 1.4e-65 253.1 150 77.3
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 1.8e-65 252.7 152 80.3
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 2.4e-65 252.3 151 76.2
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 6.9e-65 250.8 150 78.0
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 2.0e-64 249.2 152 78.3
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 2.6e-64 248.8 150 79.3
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 7.2e-62 240.7 152 76.3
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 2.1e-61 239.2 152 74.3
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 3.6e-61 238.4 153 73.9
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 4.6e-61 238.0 151 74.8
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 1.3e-60 236.5 151 73.5
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.3e-60 236.5 151 73.5
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 1.8e-60 236.1 151 74.2
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 1.8e-60 236.1 151 74.2
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 3.0e-60 235.3 151 73.5
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 6.7e-60 234.2 151 73.5
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 6.7e-60 234.2 152 75.0
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 8.7e-60 233.8 147 75.5
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 8.7e-60 233.8 152 75.0
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 1.1e-59 233.4 152 73.7
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 1.5e-59 233.0 152 75.0
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 1.9e-59 232.6 151 72.2
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 2.5e-59 232.3 156 71.2
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 3.3e-59 231.9 153 71.9
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 4.3e-59 231.5 154 71.4
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 5.7e-59 231.1 147 74.8
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 5.7e-59 231.1 147 73.5
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 7.4e-59 230.7 146 73.3
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 7.4e-59 230.7 147 72.8
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 7.4e-59 230.7 147 73.5
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 9.7e-59 230.3 153 74.5
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 1.3e-58 229.9 152 75.7
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 6.3e-58 227.6 146 74.0
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 8.2e-58 227.3 150 74.0
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 2.4e-57 225.7 146 72.6
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 3.1e-57 225.3 147 71.4
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 4.1e-57 224.9 150 72.7
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 2.6e-56 222.2 146 71.2
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 7.7e-56 220.7 152 72.4
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.0e-55 220.3 149 70.5
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 5.0e-55 218.0 146 69.9
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 2.5e-54 215.7 145 73.1
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 2.5e-54 215.7 146 70.5
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 1.2e-53 213.4 146 69.9
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 2.7e-53 212.2 148 69.6
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 6.7e-52 207.6 151 69.5
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 8.8e-52 207.2 145 67.6
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 1.1e-51 206.8 146 68.5
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 1.1e-51 206.8 158 65.8
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 1.5e-51 206.5 151 68.9
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 9.7e-51 203.8 159 64.2
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 1.1e-49 200.3 149 65.8
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 1.2e-48 196.8 158 63.3
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 5.9e-48 194.5 149 67.1
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.0e-44 183.7 140 67.1
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 1.3e-42 176.8 147 59.2
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 1.8e-41 172.9 135 65.9
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 7.0e-41 171.0 139 61.9
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 4.7e-37 158.3 109 68.8
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 8.8e-36 154.1 146 54.8
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 1.2e-35 153.7 146 53.4
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 2.0e-35 152.9 146 53.4
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 2.6e-35 152.5 146 52.7
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 2.6e-35 152.5 146 52.7
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 3.3e-35 152.1 146 54.1
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 4.4e-35 151.8 146 52.7
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 4.4e-35 151.8 146 52.7
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 1.7e-34 149.8 138 54.3
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 1.7e-34 149.8 138 53.6
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 2.2e-34 149.4 144 53.5
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 3.1e-33 145.6 144 52.8
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 1.2e-32 143.7 152 50.7
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 1.2e-32 143.7 138 53.6
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 2.0e-32 142.9 140 49.3
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 2.3e-28 129.4 77 80.5
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.8e-28 127.5 127 50.4
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 3.4e-27 125.6 73 79.5
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 3.1e-25 119.0 87 69.0
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 4.0e-20 102.1 71 71.8
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 5.2e-20 101.7 70 68.6
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 5.0e-15 85.1 116 39.7
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 6.6e-15 84.7 117 40.2


User provided reference genes

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