Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G014400 Glycine max HOM05D008677 ORTHO05D002434 2.4e-63 245.4 124 100.0
Glyma.17G014200 Glycine max HOM05D008677 ORTHO05D002434 1.7e-45 186.0 130 80.8
Glyma.07G259800 Glycine max HOM05D008677 ORTHO05D002434 5.0e-45 184.5 131 79.4
Glyma.17G014500 Glycine max HOM05D008677 ORTHO05D002434 9.4e-44 180.3 129 76.0
Glyma.07G259700 Glycine max HOM05D008677 ORTHO05D002434 1.8e-42 176.0 128 75.0
Glyma.17G014600 Glycine max HOM05D008677 ORTHO05D002434 2.2e-40 169.1 132 72.0
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 2.2e-37 159.1 133 69.2
Glyma.07G259900 Glycine max HOM05D008677 ORTHO05D002434 1.8e-34 149.4 125 69.6
VMungo1215G0276 Vigna mungo HOM05D008677 ORTHO05D002434 3.9e-34 148.3 122 68.9
VMungo1215G2206 Vigna mungo HOM05D008677 ORTHO05D002434 1.5e-33 146.4 120 69.2
VMungo1215G0105 Vigna mungo HOM05D008677 ORTHO05D002434 2.6e-33 145.6 124 66.9
Phvul.003G078000 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 2.8e-32 142.1 161 55.3
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 6.5e-29 131.0 130 60.8
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 2.5e-28 129.0 132 56.8
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 4.7e-27 124.8 130 56.2
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 6.1e-27 124.4 129 56.6
Phvul.003G077900 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 1.8e-26 122.9 120 59.2
Lj6g0026915 Lotus japonicus HOM05D008677 ORTHO05D002434 7.5e-25 117.5 127 55.9
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 3.7e-24 115.2 131 52.7
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 1.6e-22 109.8 129 54.3
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 1.6e-22 109.8 131 52.7
Lalb_Chr07g0177261 Lupinus albus HOM05D008677 ORTHO05D002434 1.1e-20 103.6 147 49.0
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 4.2e-20 101.7 122 50.8
Lalb_Chr07g0177271 Lupinus albus HOM05D008677 ORTHO05D002434 1.2e-19 100.1 140 50.7
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 1.2e-19 100.1 131 49.6
Ca_00640_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 1.4e-18 96.7 111 55.0
Medtr4g132000 Medicago truncatula HOM05D008677 ORTHO05D002434 2.6e-17 92.4 136 48.5
Psat4g006760 Pisum sativum HOM05D008677 ORTHO05D002434 7.5e-17 90.9 142 45.1
arahy.Tifrunner.gnm1.ann1.8P9XRD Arachis hypogaea HOM05D008677 ORTHO05D002434 1.3e-16 90.1 136 47.1
Psat4g006720 Pisum sativum HOM05D008677 ORTHO05D002434 1.7e-16 89.7 140 44.3
Lalb_Chr18g0056321 Lupinus albus HOM05D008677 ORTHO05D002434 2.8e-16 89.0 122 45.9
Medtr4g132010 Medicago truncatula HOM05D008677 ORTHO05D002434 6.3e-16 87.8 138 46.4
arahy.Tifrunner.gnm1.ann1.PG586I Arachis hypogaea HOM05D008677 ORTHO05D002434 3.1e-15 85.5 144 45.8
Psat4g006840 Pisum sativum HOM05D008677 ORTHO05D002434 4.1e-15 85.1 130 46.9
Glyma.13G205200 Glycine max HOM05D008677 ORTHO05D002434 5.4e-15 84.7 78 61.5
Psat4g006800 Pisum sativum HOM05D008677 ORTHO05D002434 2.7e-14 82.4 139 41.7
Psat4g007000 Pisum sativum HOM05D008677 ORTHO05D002434 2.7e-14 82.4 137 43.1
Ca_21088_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 7.7e-14 80.9 159 42.1
Ca_30196_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 7.7e-14 80.9 159 42.1
TPR.G37017 Trifolium pratense HOM05D008677 ORTHO05D002434 1.0e-13 80.5 143 40.6
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 4.2e-12 75.1 121 38.8
TPR.G36987 Trifolium pratense HOM05D008677 ORTHO05D002434 3.6e-11 72.0 149 39.6
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.7e-11 71.6 122 38.5
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 8.0e-11 70.9 127 35.4
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.8e-10 69.7 128 37.5
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 3.0e-10 68.9 132 39.4
Lj4g0000389 Lotus japonicus HOM05D008677 ORTHO05D002434 4.0e-10 68.6 118 40.7
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 5.2e-10 68.2 129 39.5
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.5e-09 66.6 122 35.2
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.5e-09 66.6 129 38.8
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 1.5e-09 66.6 134 37.3
Psat4g006960 Pisum sativum HOM05D008677 ORTHO05D002434 2.0e-09 66.2 84 48.8
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 4.4e-09 65.1 129 35.7
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 4.4e-09 65.1 128 37.5
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 5.7e-09 64.7 121 36.4
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.7e-09 64.7 127 34.6
arahy.Tifrunner.gnm1.ann1.W7920A Arachis hypogaea HOM05D008677 ORTHO05D002434 7.5e-09 64.3 127 40.9
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 7.5e-09 64.3 129 37.2
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 9.8e-09 63.9 131 35.1
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.2e-08 62.8 132 34.1
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.2e-08 62.8 133 36.8
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 3.7e-08 62.0 123 37.4
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 3.7e-08 62.0 120 37.5
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 4.9e-08 61.6 133 33.8
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 8.3e-08 60.8 123 35.0
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.4e-07 60.1 127 34.6
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 2.4e-07 59.3 122 34.4
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 2.4e-07 59.3 119 34.5
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.1e-07 58.9 131 35.9
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 4.1e-07 58.5 129 36.4
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.1e-07 58.5 123 35.0
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 5.4e-07 58.2 137 31.4
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 5.4e-07 58.2 127 33.9
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 5.4e-07 58.2 123 34.1
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 5.4e-07 58.2 131 35.9
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 9.2e-07 57.4 121 38.8
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 9.2e-07 57.4 133 30.8
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.2e-06 57.0 123 36.6
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 1.2e-06 57.0 122 32.8
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 1.2e-06 57.0 136 35.3
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.2e-06 57.0 128 34.4
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 2.0e-06 56.2 139 33.8
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.7e-06 55.8 132 31.8
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.7e-06 55.8 145 31.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 3.5e-06 55.5 121 33.1
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 3.5e-06 55.5 121 36.4
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 3.5e-06 55.5 132 31.8
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.5e-06 55.1 145 31.7
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.9e-06 54.7 130 34.6
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 5.9e-06 54.7 133 29.3
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 7.7e-06 54.3 126 30.2
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.7e-06 54.3 137 32.8
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 7.7e-06 54.3 127 32.3
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 7.7e-06 54.3 132 32.6
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.7e-06 54.3 132 32.6
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.7e-06 54.3 132 35.6


User provided reference genes

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