Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 0.0e+00 1549.6 820 100.0
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 0.0e+00 1317.0 838 86.4
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 5.4e-289 997.7 852 68.5
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 1.0e-287 993.4 899 65.7
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 5.4e-196 688.7 955 51.3
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.4e-180 637.5 927 49.6
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 9.5e-177 624.8 938 51.0
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 4.7e-176 622.5 917 49.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 6.2e-176 622.1 850 51.9
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 4.0e-167 592.8 919 50.8
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.6e-147 527.7 991 43.4
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 5.1e-146 522.7 864 46.1
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.8e-143 514.2 877 45.0
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.7e-141 507.7 901 43.3
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.2e-115 421.8 1012 37.6
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.5e-110 404.8 892 39.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 5.9e-110 402.9 894 39.3
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 3.9e-98 363.6 918 38.0
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.1e-95 355.5 933 35.7
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.5e-92 344.4 920 36.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.6e-91 341.7 867 37.4
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 4.7e-91 340.1 929 35.6
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 8.0e-91 339.3 973 35.8
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.7e-88 331.6 843 35.7
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 2.8e-88 330.9 909 38.4
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.0e-86 324.7 907 36.2
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 3.5e-86 323.9 835 35.6
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.4e-82 312.0 839 36.9
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.4e-82 312.0 912 35.5
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 1.2e-81 308.9 904 33.7
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.2e-78 298.9 898 34.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.7e-77 295.0 858 35.4
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.3e-74 284.6 897 33.8
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 6.8e-74 283.1 923 32.2
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 2.8e-72 277.7 904 34.0
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.8e-72 277.7 894 32.8
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 6.3e-72 276.6 895 32.4
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 8.3e-72 276.2 896 33.8
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.6e-70 271.9 907 33.0
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.0e-70 271.6 910 33.6
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 2.0e-70 271.6 869 33.4
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-69 269.2 900 33.1
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.1e-68 265.8 941 31.6
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 2.1e-67 261.5 929 31.9
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 8.0e-67 259.6 842 32.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.2e-66 256.9 917 33.5
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 7.5e-65 253.1 880 33.3
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 7.0e-63 246.5 871 32.1
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 1.2e-62 245.7 952 32.2
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.2e-62 245.7 896 32.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 2.7e-62 244.6 861 33.2
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 5.0e-61 240.4 897 32.9
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 1.6e-59 235.3 314 51.9
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 6.8e-58 229.9 894 31.1
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.5e-57 228.8 857 33.1
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-56 224.6 824 31.4
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 8.3e-56 223.0 978 30.3
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.9e-55 221.9 889 31.8
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.4e-55 220.3 825 31.0
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 9.2e-55 219.5 901 32.3
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.7e-53 215.3 894 31.2
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.7e-53 215.3 891 31.2
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 2.3e-53 214.9 946 30.7
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.9e-53 214.2 856 31.8
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.6e-53 213.4 879 31.9
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.5e-52 212.2 896 30.5
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.9e-52 211.8 831 30.4
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-52 211.5 825 30.2
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 2.5e-52 211.5 852 31.8
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.6e-52 210.3 882 31.5
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 8.1e-51 206.5 914 30.9
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.4e-50 205.7 871 30.1
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 4.4e-49 200.7 1020 27.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.9e-48 198.0 837 30.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 5.4e-47 193.7 881 29.3
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 9.2e-47 193.0 846 29.8
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 6.0e-46 190.3 848 30.5
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 7.8e-46 189.9 888 28.7
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 4.3e-44 184.1 257 54.5
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 5.6e-44 183.7 914 30.1
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.2e-43 182.6 878 28.6
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 3.6e-43 181.0 824 29.4
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 6.2e-43 180.3 951 28.6
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 5.2e-42 177.2 930 30.2
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.5e-41 175.6 822 29.3
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.5e-41 175.6 840 28.9
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.6e-41 174.9 840 28.9
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 3.4e-41 174.5 941 29.6
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 4.4e-41 174.1 844 29.4
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.8e-41 173.7 835 28.9
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 7.6e-41 173.3 906 27.8
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.3e-40 172.6 943 28.0
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.3e-40 172.6 884 29.4
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.9e-40 171.4 882 29.1
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.4e-40 169.9 924 29.5
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.4e-39 168.3 307 44.3
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.4e-39 168.3 833 28.8
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 9.2e-39 166.4 912 29.4
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 1.7e-37 162.2 886 28.3
VMungo1215G3006 Vigna mungo HOM05D004628 ORTHO05D005166 5.1e-37 160.6 164 56.1
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.5e-36 158.3 927 28.7
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 5.6e-36 157.1 828 27.2
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 9.6e-36 156.4 377 37.4
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 1.3e-35 156.0 908 28.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 6.2e-35 153.7 921 28.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 1.5e-33 149.1 825 27.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 7.6e-33 146.7 917 27.4
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.4e-31 142.5 923 28.1
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 1.9e-31 142.1 167 55.7
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.3e-29 136.0 847 29.0
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.3e-29 136.0 472 33.1
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.3e-29 135.2 886 27.3
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 7.3e-28 130.2 921 26.6
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.2e-25 122.9 820 27.3
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.2e-25 122.9 907 26.2
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.0e-25 122.1 908 28.4
Psat2g146240 Pisum sativum HOM05D004628 ORTHO05D005166 2.0e-25 122.1 295 39.0
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 3.8e-24 117.9 946 27.0
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 4.9e-24 117.5 918 26.5
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 8.4e-24 116.7 951 25.7
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.4e-23 115.9 912 26.5
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 5.4e-23 114.0 157 51.6
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 9.3e-23 113.2 906 27.5
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.3e-21 109.4 946 26.7
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 3.7e-19 101.3 360 31.9
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 6.2e-19 100.5 82 63.4
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 1.8e-18 99.0 862 25.6
Psat7g034040 Pisum sativum HOM05D000070 ORTHO05D007395 2.4e-18 98.6 131 52.7
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 1.2e-17 96.3 791 25.3
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 5.8e-17 94.0 158 46.2
Psat3g068120 Pisum sativum HOM05D000847 ORTHO05D002691 1.4e-15 89.4 85 57.6
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 9.3e-15 86.7 973 25.8
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 2.7e-14 85.1 278 32.4
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.8e-13 82.4 202 36.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 5.7e-12 77.4 191 38.2
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.6e-11 75.9 202 36.1
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.6e-11 75.9 60 70.0
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.8e-11 74.3 77 51.9
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 4.8e-11 74.3 108 47.2
Psat5g192240 Pisum sativum HOM05D004628 ORTHO05D005166 4.8e-11 74.3 93 49.5
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 4.0e-10 71.2 776 25.6
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 1.5e-09 69.3 310 33.2
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 4.5e-09 67.8 61 60.7
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 4.5e-09 67.8 203 34.0
arahy.Tifrunner.gnm1.ann1.Z9P2D3 Arachis hypogaea HOM05D004628 ORTHO05D005166 1.3e-08 66.2 129 47.3
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 4.2e-07 61.2 80 47.5
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 9.3e-07 60.1 82 48.8
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 1.6e-06 59.3 219 29.7
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.6e-06 59.3 297 31.0
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 1.6e-06 59.3 901 23.9
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 2.1e-06 58.9 95 45.3
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 2.7e-06 58.5 279 28.7
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 7.9e-06 57.0 125 37.6
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 7.9e-06 57.0 1013 24.5


User provided reference genes

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