Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.4e-275 951.0 475 100.0
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.3e-263 912.5 475 95.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.5e-259 899.0 475 94.1
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 2.4e-257 891.7 475 93.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 6.2e-245 850.5 475 88.2
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 4.4e-243 844.3 475 87.8
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 5.4e-241 837.4 480 86.9
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 3.5e-240 834.7 475 87.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 5.6e-238 827.4 480 84.8
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.7e-234 814.7 483 83.0
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.1e-233 811.2 483 82.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 9.2e-233 810.1 495 81.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-227 791.2 516 77.3
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.9e-222 775.8 479 78.5
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.9e-222 775.8 479 80.8
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.8e-221 771.9 479 78.5
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 3.1e-220 768.5 506 74.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.2e-219 766.5 478 78.5
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.2e-219 766.5 478 78.5
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 6.4e-218 760.8 479 77.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.2e-217 758.4 479 76.6
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.3e-217 756.9 479 76.0
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 2.1e-216 755.7 480 78.1
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 7.9e-216 753.8 479 76.0
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 1.0e-215 753.4 432 85.6
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.6e-215 750.7 481 75.5
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 5.3e-212 741.1 490 74.3
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 5.3e-212 741.1 479 75.6
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.2e-211 740.0 478 76.8
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.5e-211 738.0 477 74.8
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.4e-210 734.2 482 73.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 8.4e-210 733.8 478 73.6
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-209 733.4 477 75.5
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.4e-209 733.0 476 73.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 7.1e-209 730.7 483 73.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.6e-208 729.6 479 73.1
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.1e-208 729.2 479 73.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 4.6e-208 728.0 478 73.8
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 6.0e-208 727.6 477 75.3
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.3e-207 725.7 485 73.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 3.9e-207 724.9 482 74.1
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.9e-207 724.9 478 73.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 6.7e-207 724.2 478 73.4
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 9.6e-206 720.3 480 71.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.7e-205 718.4 477 74.2
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.4e-204 716.5 477 77.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.4e-204 715.7 477 74.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 7.6e-203 710.7 481 72.6
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.3e-202 709.9 493 70.6
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.7e-202 709.5 483 71.6
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 8.4e-202 707.2 477 71.7
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.1e-201 706.8 485 71.3
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.4e-201 706.4 475 72.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.1e-201 704.1 483 70.8
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 7.1e-201 704.1 481 70.5
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 1.2e-200 703.4 481 71.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.9e-200 700.7 484 70.5
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 1.0e-199 700.3 481 71.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 3.0e-199 698.7 483 70.2
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 3.9e-199 698.4 480 70.6
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 6.7e-199 697.6 475 71.8
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 6.7e-199 697.6 480 70.8
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.7e-199 697.6 480 70.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.5e-198 696.4 483 70.4
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.9e-198 696.0 483 69.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.5e-198 695.7 483 71.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.3e-198 694.9 482 71.4
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 9.6e-198 693.7 480 70.2
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.3e-197 693.3 476 73.1
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 3.7e-197 691.8 475 70.5
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.1e-196 690.3 475 70.3
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 6.9e-196 687.6 475 70.3
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 5.9e-195 684.5 475 70.3
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.2e-194 682.6 480 69.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.9e-193 679.5 444 72.5
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.5e-193 679.1 507 66.3
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 4.2e-193 678.3 480 68.5
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 5.5e-193 677.9 475 70.7
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 7.2e-193 677.6 481 68.6
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.9e-192 674.1 484 68.0
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.0e-191 673.7 481 68.2
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.0e-191 673.7 488 69.1
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-191 673.7 496 67.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 3.0e-191 672.2 483 68.5
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 5.1e-191 671.4 481 68.2
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 6.7e-191 671.0 481 68.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.7e-191 671.0 415 76.4
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.7e-191 671.0 487 68.4
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.5e-190 669.8 481 67.6
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.9e-190 669.5 481 68.4
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 4.3e-190 668.3 481 68.0
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 5.7e-190 667.9 475 68.2
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 7.4e-190 667.5 481 68.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 7.4e-190 667.5 481 68.2
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.3e-189 666.8 570 60.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 4.1e-188 661.8 486 66.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 1.5e-187 659.8 461 69.6
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.2e-186 656.0 505 65.0
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.1e-184 649.4 475 65.5
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 5.1e-183 644.8 484 65.7
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 6.7e-183 644.4 483 65.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.0e-182 642.9 481 64.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.6e-182 642.5 480 64.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-180 636.7 465 69.2
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.8e-180 636.3 483 65.4
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 4.1e-180 635.2 430 72.1
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.2e-176 623.6 415 72.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 2.1e-176 622.9 514 62.3
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 9.1e-172 607.4 559 58.5
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.8e-170 602.1 487 60.4
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 9.4e-169 597.4 476 61.6
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 6.7e-167 591.3 494 59.1
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.6e-166 589.3 481 62.0
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.2e-165 586.3 480 58.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.8e-164 583.2 424 70.3
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.4e-148 530.4 413 64.4
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 8.0e-144 514.6 358 71.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.2e-140 502.7 497 55.7
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 4.1e-140 502.3 480 56.5
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.2e-100 369.4 597 38.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 5.6e-97 359.0 253 65.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.7e-96 356.3 526 44.7
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.5e-91 339.7 256 66.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 9.7e-81 305.1 217 71.9
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.4e-78 296.6 182 72.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.5e-77 292.4 228 60.1
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 2.1e-75 287.3 545 35.6
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 4.8e-72 276.2 374 44.9
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 8.2e-72 275.4 250 55.2
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.7e-67 260.4 181 75.7
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.7e-66 255.8 431 40.8
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.6e-62 243.8 175 64.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.2e-60 236.9 262 48.1
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.3e-56 224.9 488 33.2
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 6.7e-50 202.6 170 61.2
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-48 197.2 212 55.7
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.3e-42 177.6 382 33.0
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 4.1e-39 166.8 450 27.3
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.9e-38 162.9 452 27.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.1e-31 140.6 215 39.1
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-28 132.1 179 48.0
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.2e-17 95.5 65 80.0
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-17 94.7 62 82.3
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-16 92.0 107 50.5
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 8.3e-16 89.4 65 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.0e-15 86.3 135 37.0
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 7.0e-15 86.3 256 27.7
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-11 73.9 70 52.9
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.7e-11 73.6 69 56.5
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.2e-10 70.1 68 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.1e-07 62.4 67 52.2


User provided reference genes

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