Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 9.3e-87 323.6 168 100.0
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 1.4e-66 256.5 162 85.8
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 1.7e-64 249.6 180 75.6
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 2.9e-64 248.8 179 73.7
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 6.3e-43 177.9 191 57.1
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 2.4e-42 176.0 195 54.9
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 5.9e-41 171.4 184 54.3
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 3.0e-37 159.1 195 52.3
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 3.3e-36 155.6 184 50.0
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 3.3e-36 155.6 135 62.2
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.3e-36 155.6 193 49.2
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 4.4e-36 155.2 186 48.9
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 7.5e-36 154.5 176 52.3
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 9.7e-36 154.1 193 48.7
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 2.8e-35 152.5 172 52.3
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 2.8e-35 152.5 172 52.3
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 2.8e-35 152.5 207 48.3
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 3.7e-35 152.1 107 71.0
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 6.3e-35 151.4 109 70.6
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 1.1e-34 150.6 101 76.2
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 2.4e-34 149.4 184 50.5
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 2.4e-34 149.4 115 67.0
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 3.1e-34 149.1 185 45.4
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 3.1e-34 149.1 172 51.2
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 3.1e-34 149.1 180 46.1
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 5.3e-34 148.3 121 63.6
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 7.0e-34 147.9 125 64.8
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 1.2e-33 147.1 135 58.5
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 1.2e-33 147.1 154 51.9
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 1.6e-33 146.7 106 69.8
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 2.0e-33 146.4 108 70.4
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 2.7e-33 146.0 112 64.3
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 3.5e-33 145.6 179 49.7
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 3.5e-33 145.6 108 68.5
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 4.5e-33 145.2 105 70.5
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 4.5e-33 145.2 109 66.1
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 4.5e-33 145.2 108 66.7
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 4.5e-33 145.2 108 65.7
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 5.9e-33 144.8 103 68.9
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 5.9e-33 144.8 108 66.7
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 7.7e-33 144.4 179 49.2
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 7.7e-33 144.4 108 67.6
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 1.0e-32 144.1 112 66.1
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 1.3e-32 143.7 183 47.0
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.3e-32 143.7 109 65.1
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 1.3e-32 143.7 193 45.6
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 1.7e-32 143.3 189 48.1
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 2.2e-32 142.9 177 50.3
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 2.2e-32 142.9 141 52.5
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 2.9e-32 142.5 130 56.2
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 2.9e-32 142.5 145 51.0
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 2.9e-32 142.5 156 50.0
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 3.8e-32 142.1 211 42.7
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 3.8e-32 142.1 186 47.3
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 5.0e-32 141.7 111 62.2
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 5.0e-32 141.7 108 65.7
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 5.0e-32 141.7 163 49.7
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 5.0e-32 141.7 105 66.7
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 5.0e-32 141.7 156 50.0
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 8.5e-32 141.0 163 50.3
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.5e-32 141.0 138 55.8
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 8.5e-32 141.0 111 62.2
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 1.1e-31 140.6 163 49.7
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 1.1e-31 140.6 105 66.7
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 1.5e-31 140.2 111 61.3
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 1.5e-31 140.2 109 62.4
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 2.5e-31 139.4 146 50.0
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 3.2e-31 139.0 108 64.8
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 4.2e-31 138.7 165 47.9
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 4.2e-31 138.7 165 47.9
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 7.2e-31 137.9 111 62.2
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 7.2e-31 137.9 147 46.9
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 9.4e-31 137.5 96 71.9
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 9.4e-31 137.5 187 46.0
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 1.2e-30 137.1 112 58.0
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 1.6e-30 136.7 191 45.5
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 2.7e-30 136.0 134 54.5
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 4.7e-30 135.2 109 60.6
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 4.7e-30 135.2 94 67.0
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 8.8e-29 131.0 129 55.0
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 1.5e-28 130.2 94 66.0
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.0e-28 129.8 108 62.0
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.0e-28 129.8 108 62.0
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 7.5e-28 127.9 96 64.6
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 1.7e-27 126.7 156 46.8
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 1.7e-27 126.7 170 42.9
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 1.6e-25 120.2 113 54.9
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 3.5e-25 119.0 98 58.2
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 2.2e-24 116.3 83 69.9
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 3.8e-24 115.5 72 77.8
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 6.5e-24 114.8 102 56.9
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 1.5e-23 113.6 180 41.7
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 1.9e-23 113.2 159 42.8
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 2.5e-23 112.8 100 58.0
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.2e-22 110.5 95 61.1
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 1.0e-21 107.5 92 58.7
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 2.6e-20 102.8 86 59.3
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 9.8e-20 100.9 82 47.6
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 6.3e-19 98.2 75 62.7
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 1.8e-18 96.7 75 64.0
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 5.4e-18 95.1 93 45.2
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 8.6e-16 87.8 61 67.2
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-14 83.2 87 42.5
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 1.2e-09 67.4 51 60.8
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.3e-08 63.9 40 72.5
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 8.6e-08 61.2 43 67.4
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 4.7e-06 55.5 129 33.3


User provided reference genes

Program Settings