Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G003550 Glycine max HOM05D000735 ORTHO05D004669 1.3e-48 196.1 96 100.0
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 3.1e-34 148.3 78 91.0
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 2.5e-28 128.6 78 83.3
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 1.8e-26 122.5 78 79.5
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 6.0e-22 107.5 79 67.1
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 1.7e-21 105.9 79 67.1
Lalb_Chr20g0119781 Lupinus albus HOM05D000735 ORTHO05D004669 3.0e-21 105.1 79 65.8
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 2.1e-19 99.0 79 63.3
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 8.1e-19 97.1 79 63.3
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.1e-18 96.7 63 71.4
MD10G1342600 Malus domestica HOM05D000735 ORTHO05D004669 4.0e-18 94.7 64 71.9
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 5.2e-18 94.4 94 53.2
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 6.8e-18 94.0 94 53.2
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.2e-17 93.2 70 61.4
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.5e-17 92.8 63 69.8
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 2.0e-17 92.4 75 64.0
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 3.4e-17 91.7 79 60.8
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 5.8e-17 90.9 64 68.8
RcHm_v2.0_Chr5g0000031 Rosa chinensis HOM05D000735 ORTHO05D004669 9.9e-17 90.1 62 69.4
Cc09_g00020 Coffea canephora HOM05D000735 ORTHO05D004669 1.3e-16 89.7 64 65.6
Lalb_Chr18g0057591 Lupinus albus HOM05D000735 ORTHO05D004669 1.7e-16 89.4 87 56.3
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 2.2e-16 89.0 76 57.9
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 2.2e-16 89.0 61 68.9
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 2.2e-16 89.0 85 55.3
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 2.9e-16 88.6 75 60.0
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 4.9e-16 87.8 84 52.4
Sopen04g025520 Solanum pennellii HOM05D000735 ORTHO05D004669 4.9e-16 87.8 84 52.4
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 8.3e-16 87.0 62 66.1
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 1.4e-15 86.3 62 66.1
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 1.9e-15 85.9 64 65.6
CAN.G642.3 Capsicum annuum HOM05D000735 ORTHO05D004669 2.4e-15 85.5 81 54.3
Cpa.g.sc31.47 Carica papaya HOM05D000735 ORTHO05D004669 2.4e-15 85.5 71 60.6
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 4.1e-15 84.7 60 65.0
TAR365G1081 Trochodendron aralioides HOM05D000735 ORTHO05D004669 5.4e-15 84.3 59 64.4
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 7.1e-15 84.0 60 63.3
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 2.1e-14 82.4 62 62.9
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 2.1e-14 82.4 64 60.9
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 2.1e-14 82.4 64 57.8
TPR.G10488 Trifolium pratense HOM05D000735 ORTHO05D004669 2.1e-14 82.4 103 49.5
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 2.7e-14 82.0 56 67.9
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 2.7e-14 82.0 63 61.9
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 2.7e-14 82.0 81 50.6
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 3.5e-14 81.6 61 60.7
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 3.5e-14 81.6 78 52.6
QL05p065759 Quercus lobata HOM05D000735 ORTHO05D004669 3.5e-14 81.6 61 65.6
Rhsim13G0137600 Rhododendron simsii HOM05D000735 ORTHO05D004669 4.6e-14 81.3 62 61.3
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 6.0e-14 80.9 64 57.8
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 7.8e-14 80.5 59 62.7
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 7.8e-14 80.5 77 55.8
Eucgr.E04240 Eucalyptus grandis HOM05D000735 ORTHO05D004669 1.0e-13 80.1 64 64.1
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.0e-13 80.1 85 49.4
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 1.0e-13 80.1 85 49.4
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 1.0e-13 80.1 61 62.3
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 1.3e-13 79.7 55 70.9
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 1.3e-13 79.7 63 61.9
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 1.7e-13 79.3 68 57.4
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.7e-13 79.3 60 60.0
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 2.3e-13 79.0 66 54.5
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 2.3e-13 79.0 60 60.0
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 2.3e-13 79.0 60 60.0
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 2.3e-13 79.0 69 58.0
GSVIVG01019361001 Vitis vinifera HOM05D000735 ORTHO05D004669 2.3e-13 79.0 64 57.8
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 3.0e-13 78.6 64 54.7
Oeu025985.1 Olea europaea HOM05D000641 ORTHO05D007351 3.9e-13 78.2 67 56.7
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 3.9e-13 78.2 67 56.7
ATR0568G110 Amborella trichopoda HOM05D000735 ORTHO05D004669 1.9e-12 75.9 69 53.6
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 2.5e-12 75.5 58 63.8
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 3.3e-12 75.1 63 57.1
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 5.6e-12 74.3 62 54.8
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 9.6e-12 73.6 63 54.0
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.2e-11 73.2 59 61.0
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 1.2e-11 73.2 59 61.0
COL.COLO4_19351 Corchorus olitorius HOM05D000735 ORTHO05D004669 2.1e-11 72.4 58 56.9
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 2.8e-11 72.0 59 54.2
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 4.7e-11 71.2 58 56.9
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 6.2e-11 70.9 72 58.3
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 6.2e-11 70.9 64 56.2
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 8.1e-11 70.5 62 54.8
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 1.1e-10 70.1 60 55.0
Ah.01g012230 Amaranthus hybridus HOM05D000735 ORTHO05D004669 1.8e-10 69.3 59 55.9
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 1.8e-10 69.3 62 51.6
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 5.2e-10 67.8 58 56.9
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 6.8e-10 67.4 58 55.2
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 6.8e-10 67.4 58 55.2
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 8.9e-10 67.0 59 52.5
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 1.2e-09 66.6 83 50.6
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 1.2e-09 66.6 54 55.6
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.0e-09 65.9 58 55.2
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 2.6e-09 65.5 56 55.4
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 5.8e-09 64.3 57 50.9
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 9.9e-09 63.5 49 59.2
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 1.7e-08 62.8 55 56.4
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 2.2e-08 62.4 55 56.4
HanXRQChr14g0455071 Helianthus annuus HOM05D000735 ORTHO05D004669 4.9e-08 61.2 85 43.5
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 4.9e-08 61.2 60 55.0
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 8.4e-08 60.5 55 54.5
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 8.4e-08 60.5 44 63.6
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 1.4e-07 59.7 54 55.6
CARHR046050 Cardamine hirsuta HOM05D000735 ORTHO05D004669 1.4e-07 59.7 49 55.1
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 1.9e-07 59.3 51 56.9
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 1.9e-07 59.3 51 56.9
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 1.9e-07 59.3 51 56.9
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 2.4e-07 58.9 56 51.8
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 3.2e-07 58.5 64 45.3
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 3.2e-07 58.5 49 53.1
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 5.4e-07 57.8 66 48.5
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 1.2e-06 56.6 45 55.6
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 1.2e-06 56.6 49 51.0
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.6e-06 56.2 49 51.0


User provided reference genes

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