Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 4.1e-113 411.4 202 100.0
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 6.5e-95 350.9 192 91.1
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 3.7e-82 308.5 216 76.4
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 8.0e-77 290.8 216 72.7
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 2.8e-61 239.2 206 65.5
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 7.1e-57 224.6 209 62.7
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 9.2e-49 197.6 152 71.1
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 5.2e-44 181.8 194 51.0
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 4.9e-42 175.3 193 50.3
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 9.3e-41 171.0 193 50.8
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.6e-40 168.7 193 48.7
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 7.8e-40 167.9 218 46.3
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 7.8e-40 167.9 218 46.3
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.0e-39 167.5 197 51.8
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.3e-38 161.4 192 48.4
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 2.1e-37 159.8 199 45.7
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 2.1e-37 159.8 192 47.4
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 3.6e-37 159.1 195 48.2
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 6.2e-37 158.3 204 45.1
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 2.4e-36 156.4 197 44.2
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 2.4e-36 156.4 222 45.9
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 9.0e-36 154.5 211 47.4
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 3.4e-35 152.5 192 46.9
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 7.6e-35 151.4 192 45.3
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 9.9e-35 151.0 216 43.1
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.3e-34 150.6 195 46.2
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.3e-34 150.6 195 46.2
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 1.3e-34 150.6 193 44.0
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.7e-34 150.2 200 48.0
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.7e-34 150.2 193 48.2
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.2e-34 149.8 210 42.9
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 1.1e-33 147.5 197 45.7
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.4e-33 147.1 211 43.6
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.4e-33 147.1 193 45.1
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.4e-33 146.4 195 44.6
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 3.2e-33 146.0 195 48.2
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 9.3e-33 144.4 198 44.4
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 1.2e-32 144.1 214 43.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.6e-32 143.7 199 45.7
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 2.1e-32 143.3 215 45.1
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.3e-31 140.6 209 42.6
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 5.1e-31 138.7 184 45.7
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 5.1e-31 138.7 198 42.9
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 1.9e-30 136.7 195 45.6
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 1.9e-30 136.7 199 44.7
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.3e-30 135.6 141 50.4
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 7.3e-30 134.8 194 44.3
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.6e-29 133.7 196 44.4
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 2.8e-29 132.9 211 39.8
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 3.6e-29 132.5 199 41.2
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.4e-28 130.6 204 43.1
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 5.3e-28 128.6 204 41.7
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 6.9e-28 128.3 202 43.6
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.5e-27 127.1 207 41.5
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 3.4e-27 125.9 199 41.2
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.5e-27 125.6 202 43.1
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 5.8e-27 125.2 197 43.1
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 7.6e-27 124.8 201 42.3
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 9.9e-27 124.4 204 42.2
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 9.9e-27 124.4 201 41.8
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 1.7e-26 123.6 199 38.7
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 3.8e-26 122.5 195 39.0
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 4.9e-26 122.1 132 50.0
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 2.4e-25 119.8 190 37.9
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.2e-25 119.4 124 53.2
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 4.2e-25 119.0 193 39.4
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 9.3e-25 117.9 201 37.8
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 1.6e-24 117.1 191 40.8
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 6.0e-24 115.2 196 38.3
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 7.9e-24 114.8 193 39.9
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 7.9e-24 114.8 193 39.9
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 1.3e-23 114.0 191 40.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 7.4e-22 108.2 193 35.8
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 7.4e-22 108.2 192 37.5
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.6e-21 107.1 149 45.6
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 2.1e-21 106.7 210 35.2
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 2.8e-21 106.3 193 37.8
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 3.7e-21 105.9 112 52.7
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 2.0e-19 100.1 193 37.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 2.0e-19 100.1 223 32.3
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 3.4e-19 99.4 214 38.3
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.3e-18 97.4 232 31.5
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.2e-17 92.8 166 34.3
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 2.7e-16 89.7 151 39.1
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 1.0e-15 87.8 140 37.9
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.8e-15 87.0 137 40.9
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.9e-15 85.9 216 28.2
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 4.3e-14 82.4 137 36.5
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 7.4e-14 81.6 106 44.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 2.1e-13 80.1 209 30.6
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 3.7e-13 79.3 96 49.0
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.8e-13 79.0 139 34.5
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.8e-12 77.0 143 35.0
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 9.0e-12 74.7 141 29.8
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 2.6e-11 73.2 137 33.6
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 3.4e-11 72.8 139 33.1
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 4.5e-11 72.4 194 32.0
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 7.6e-11 71.6 134 38.1
TPR.G34860 Trifolium pratense HOM05D007287 ORTHO05D008965 1.7e-10 70.5 101 45.5
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 2.9e-10 69.7 78 50.0
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 2.9e-10 69.7 112 41.1
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 2.9e-10 69.7 117 38.5
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 6.5e-10 68.6 136 33.8
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.1e-09 67.8 144 31.9
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 1.4e-09 67.4 139 32.4
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 2.5e-09 66.6 143 32.2
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 3.2e-09 66.2 136 34.6
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.2e-09 65.9 45 66.7
Psat7g166880 Pisum sativum HOM05D007287 ORTHO05D008965 5.5e-09 65.5 85 42.4
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 9.3e-09 64.7 83 49.4
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 1.2e-08 64.3 142 33.1
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 2.7e-08 63.2 123 35.8
A07p18880 Brassica napus HOM05D009615 ORTHO05D011760 4.6e-08 62.4 78 48.7
BraA07t29596Z Brassica rapa HOM05D009615 ORTHO05D011760 4.6e-08 62.4 78 48.7
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 6.1e-08 62.0 143 30.8
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 7.9e-08 61.6 146 33.6
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 1.3e-07 60.8 87 40.2
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 3.0e-07 59.7 87 40.2
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.9e-07 59.3 77 45.5
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 6.7e-07 58.5 79 43.0
THA.LOC104806274 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.5e-06 57.4 119 35.3
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 2.5e-06 56.6 180 30.0


User provided reference genes

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