Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 9.5e-90 333.6 179 100.0
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.3e-81 306.6 179 92.7
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 3.1e-80 302.0 179 91.6
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 6.2e-73 277.7 173 86.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 6.2e-73 277.7 173 86.7
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 3.5e-68 261.9 179 79.9
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 6.9e-64 247.7 175 76.6
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 6.9e-64 247.7 175 78.3
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.8e-59 233.0 188 70.2
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.3e-59 232.6 179 73.7
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.3e-54 216.9 178 72.5
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-54 216.1 179 70.4
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-54 216.1 179 70.4
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 2.7e-52 209.1 199 63.8
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 3.0e-51 205.7 185 65.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 6.7e-51 204.5 178 68.0
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 8.7e-51 204.1 179 67.0
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 1.1e-50 203.8 187 66.3
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 1.5e-50 203.4 182 66.5
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.9e-50 203.0 185 65.4
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 2.5e-50 202.6 180 69.4
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.4e-50 201.1 185 64.3
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 7.4e-50 201.1 191 65.4
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 9.7e-50 200.7 188 64.9
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.2e-49 199.5 185 63.8
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 3.7e-49 198.7 186 64.5
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 6.3e-49 198.0 186 64.5
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 8.2e-49 197.6 185 63.8
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.1e-48 197.2 186 64.5
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.4e-48 196.8 186 65.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 1.4e-48 196.8 187 65.2
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.8e-48 196.4 184 63.0
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.8e-48 196.4 185 67.0
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 2.4e-48 196.1 180 65.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.1e-48 195.7 187 64.7
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.1e-48 195.3 192 63.5
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 6.9e-48 194.5 180 64.4
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 6.9e-48 194.5 182 63.7
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 1.2e-47 193.7 184 63.6
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 2.0e-47 193.0 177 65.5
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.0e-47 193.0 180 66.7
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 4.5e-47 191.8 177 61.6
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 5.9e-47 191.4 181 65.7
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.7e-47 191.0 182 65.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 1.3e-46 190.3 189 62.4
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 2.2e-46 189.5 180 63.9
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.9e-46 189.1 179 63.7
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 3.8e-46 188.7 185 62.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.8e-46 188.7 185 62.2
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 3.8e-46 188.7 184 63.0
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 5.0e-46 188.3 178 63.5
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 8.5e-46 187.6 172 64.5
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 8.5e-46 187.6 189 63.0
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.1e-45 187.2 178 63.5
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.1e-45 187.2 184 63.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 3.2e-45 185.7 186 61.8
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.2e-45 185.7 191 61.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.2e-44 183.7 189 60.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 7.9e-44 181.0 192 60.4
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.0e-43 180.6 189 60.3
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.0e-43 180.6 123 78.9
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.8e-43 179.9 189 60.3
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 3.0e-43 179.1 179 58.7
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.9e-43 178.7 129 73.6
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 5.1e-43 178.3 183 61.7
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 6.7e-43 177.9 179 61.5
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 6.7e-43 177.9 180 61.1
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 8.8e-43 177.6 181 60.8
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 1.5e-42 176.8 188 58.5
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 3.3e-42 175.6 184 58.7
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 4.3e-42 175.3 180 61.1
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 4.3e-42 175.3 180 61.1
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 4.3e-42 175.3 188 57.4
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 7.4e-42 174.5 189 58.7
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 9.7e-42 174.1 180 61.1
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.3e-41 173.7 187 56.1
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 1.7e-41 173.3 188 58.0
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 2.8e-41 172.6 180 60.6
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 3.7e-41 172.2 185 57.8
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 4.8e-41 171.8 180 58.9
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 4.8e-41 171.8 180 58.9
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.1e-40 170.6 183 57.9
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.4e-40 170.2 180 58.9
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 1.8e-40 169.9 177 58.2
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 9.1e-40 167.5 229 49.3
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 1.2e-39 167.2 184 58.2
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 3.4e-39 165.6 121 71.9
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 5.9e-39 164.9 138 65.2
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.3e-38 163.7 124 71.8
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 2.2e-38 162.9 185 55.1
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.2e-38 162.9 121 72.7
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 3.8e-38 162.2 178 55.6
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 6.5e-38 161.4 187 56.7
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 8.5e-38 161.0 183 56.8
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.1e-37 160.6 187 54.5
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 7.2e-37 157.9 195 54.4
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 2.1e-36 156.4 189 54.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 6.1e-36 154.8 165 57.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.0e-35 152.5 124 67.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-35 152.1 130 67.7
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 3.7e-33 145.6 128 64.8
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.4e-32 142.9 95 82.1
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.1e-32 142.5 96 82.3
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 5.3e-32 141.7 123 58.5
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.6e-31 139.4 182 48.9
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 4.5e-31 138.7 184 51.1
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.3e-30 137.1 194 48.5
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.9e-30 136.0 193 48.2
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.2e-28 130.6 90 81.1
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 2.1e-28 129.8 181 48.1
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 2.7e-28 129.4 167 51.5
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 1.4e-27 127.1 124 59.7
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.9e-27 125.6 95 73.7
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 6.7e-27 124.8 162 50.6
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.1e-26 124.0 246 40.2
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 4.4e-26 122.1 181 49.2
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.3e-25 120.6 132 55.3
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.6e-23 113.6 162 45.7
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.6e-23 113.6 124 59.7
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 1.0e-22 110.9 179 48.0
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.7e-22 110.2 134 53.7
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 9.4e-21 104.4 141 48.9
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.0e-18 96.7 96 58.3
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 5.4e-16 88.6 67 64.2
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.5e-15 85.5 64 79.7
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 5.9e-15 85.1 83 51.8
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 2.9e-14 82.8 126 46.0
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 3.8e-14 82.4 109 45.9
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 1.0e-11 74.3 81 54.3
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 4.0e-11 72.4 106 46.2
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.2e-10 70.9 141 40.4
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 2.0e-10 70.1 64 60.9
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 5.7e-10 68.6 80 50.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 5.7e-10 68.6 80 50.0
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 5.4e-08 62.0 100 43.0
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 1.6e-07 60.5 62 51.6
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 1.3e-06 57.4 81 44.4
CAN.G419.11 Capsicum annuum HOM05D005654 ORTHO05D006438 2.9e-06 56.2 40 80.0
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.0e-06 55.5 43 74.4


User provided reference genes

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