Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 2276.9 1173 100.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1928.7 1173 86.3
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1927.1 1173 85.7
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1804.6 1175 79.6
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1803.9 1176 80.1
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1795.4 1175 79.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1785.8 1177 78.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1771.5 1175 79.9
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1761.5 1175 77.8
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1697.6 1221 74.4
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1640.6 1201 74.1
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1454.9 1167 66.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1423.7 1180 65.0
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1421.0 1167 65.2
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1415.2 1159 65.1
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1414.1 1178 64.8
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1399.4 1155 65.3
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1397.1 1168 64.4
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1393.6 1183 64.1
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1391.7 1168 64.5
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1386.3 1155 63.5
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1384.4 1182 61.9
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1379.0 1174 64.3
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1364.0 1142 62.3
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1361.3 1176 62.5
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1360.9 1172 63.4
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1353.6 1179 62.1
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1340.1 1166 61.9
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1339.3 1164 63.2
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1330.5 1271 55.8
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1324.7 1168 61.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1321.6 1037 64.4
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1316.2 1165 59.8
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1312.7 1157 61.2
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1312.0 1182 60.7
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1309.3 1152 60.1
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1308.5 1155 60.6
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1298.5 1180 60.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1293.1 1169 59.5
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1285.0 1181 59.2
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1284.2 1161 59.5
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1281.5 1037 63.0
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1268.8 1130 60.7
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1267.7 1346 55.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1258.8 1166 58.8
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1256.1 1161 59.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1255.7 1167 59.0
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1245.7 1233 56.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1240.7 1171 58.1
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1233.0 1180 57.5
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1229.9 1636 46.6
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1223.8 1158 58.2
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1204.9 1157 55.9
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1199.1 839 76.6
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1199.1 1157 56.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1194.9 1166 55.7
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1190.6 1091 61.0
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1190.3 1152 56.0
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1189.1 1162 56.3
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1186.4 1163 57.2
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1185.6 633 94.2
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1182.9 1175 56.9
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1180.2 1161 56.0
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1174.8 1170 55.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1174.5 1173 55.4
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1172.9 1142 57.2
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1169.8 1173 55.9
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1168.3 1154 56.8
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1168.3 1154 56.8
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1164.1 1154 55.4
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1161.7 949 62.6
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1197 54.4
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1157.5 1174 54.6
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1157.1 1136 55.9
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1152.9 1167 56.1
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1145.6 1160 54.1
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1137.5 1157 54.4
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1122.8 1144 53.8
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1122.5 1155 55.6
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1120.9 1003 58.8
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1094.0 1123 53.8
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1093.6 1169 53.0
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 0.0e+00 1082.0 1034 54.3
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 5.7e-300 1034.6 1058 54.7
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 5.7e-300 1034.6 1181 49.1
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.3e-299 1031.2 658 79.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.1e-298 1030.4 657 79.0
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.4e-298 1029.2 1239 48.8
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.9e-287 993.0 1150 49.2
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 7.5e-276 954.5 989 53.7
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 1.9e-271 939.9 1157 46.9
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 5.2e-245 852.0 1196 42.8
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 6.4e-243 845.1 738 59.6
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 5.4e-242 842.0 716 58.7
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 2.1e-233 813.5 1044 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 8.2e-198 695.3 1049 39.8
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 3.1e-197 693.3 965 39.9
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.2e-193 681.4 781 50.7
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.9e-186 657.5 668 53.6
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 4.2e-186 656.4 1134 37.6
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 2.3e-176 624.0 1242 36.1
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 8.8e-176 622.1 493 65.5
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.5e-170 604.7 1227 35.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 4.4e-143 513.5 1228 29.8
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 2.4e-112 411.4 435 54.3
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.4e-102 376.3 419 54.4
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.3e-62 246.1 275 46.5
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 4.2e-61 241.1 177 66.7
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 4.5e-39 167.9 126 64.3
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.2e-26 126.7 502 24.1
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 2.7e-23 115.5 84 64.3
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 2.7e-23 115.5 166 41.0
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-17 96.7 78 60.3
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 1.6e-12 79.7 61 65.6
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.4e-11 76.6 84 48.8
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.0e-10 72.8 71 52.1
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.9e-09 68.9 40 75.0
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 2.9e-09 68.9 76 48.7
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 4.9e-09 68.2 43 72.1
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 8.4e-09 67.4 175 44.0
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 9.2e-08 63.9 85 44.7
Medtr6g074780 Medicago truncatula HOM05D000005 ORTHO05D000012 9.2e-08 63.9 37 78.4
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 1.2e-07 63.5 41 70.7
Medtr6g478020 Medicago truncatula HOM05D000005 ORTHO05D000012 4.6e-07 61.6 42 69.0
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 1.0e-06 60.5 37 70.3
Medtr6g074790 Medicago truncatula HOM05D006302 ORTHO05D007960 1.3e-06 60.1 46 67.4


User provided reference genes

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