Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 2.8e-106 388.7 198 100.0
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.7e-95 352.8 198 86.9
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 2.7e-93 345.5 198 84.3
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 3.6e-90 335.1 198 81.8
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.0e-88 329.3 198 81.3
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 3.4e-88 328.6 198 81.3
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 7.6e-88 327.4 198 82.3
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.9e-86 322.8 198 79.3
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 9.3e-86 320.5 196 80.1
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 2.3e-84 315.8 196 78.6
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 6.6e-84 314.3 198 76.8
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.5e-83 313.2 196 78.6
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.9e-83 312.8 198 76.8
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 3.3e-83 312.0 198 76.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 3.3e-83 312.0 198 75.8
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 5.6e-83 311.2 198 75.8
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 9.6e-83 310.5 198 75.3
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.3e-82 310.1 198 75.8
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.3e-82 310.1 197 77.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.6e-82 309.7 197 76.1
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 2.1e-82 309.3 198 75.8
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.6e-82 308.5 198 73.2
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 8.1e-82 307.4 198 75.3
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 4.0e-81 305.1 198 74.2
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 5.3e-81 304.7 197 73.1
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 76.3
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 76.3
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 73.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.0e-80 302.8 197 77.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.6e-80 302.4 197 72.6
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.6e-80 302.4 197 71.6
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.4e-80 302.0 198 73.2
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 4.4e-80 301.6 198 74.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 72.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 9.9e-80 300.4 197 74.1
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 70.2
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 9.9e-80 300.4 198 71.2
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.3e-79 300.1 198 71.7
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.7e-79 299.7 198 70.7
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 2.9e-79 298.9 198 74.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 3.8e-79 298.5 198 72.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 4.9e-79 298.1 197 72.1
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 6.4e-79 297.7 196 73.5
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 6.4e-79 297.7 195 72.3
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 6.4e-79 297.7 198 72.7
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 69.2
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.9e-78 296.2 198 72.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 2.4e-78 295.8 196 74.0
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 3.2e-78 295.4 197 71.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 3.2e-78 295.4 198 71.2
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.2e-78 295.4 196 74.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 3.2e-78 295.4 197 73.6
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 73.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.7
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.4e-78 294.7 183 77.6
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 73.7
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 7.1e-78 294.3 197 69.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 70.7
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 9.3e-78 293.9 197 72.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.2e-77 293.5 197 69.5
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 72.2
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.6e-77 293.1 196 68.9
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.1e-77 292.7 198 71.7
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.7e-77 292.4 198 69.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 3.5e-77 292.0 189 73.5
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 7.9e-77 290.8 198 70.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.0e-76 290.4 191 75.4
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.0e-76 290.4 198 69.2
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.1e-75 287.0 198 69.2
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 5.6e-75 284.6 198 64.6
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 9.6e-75 283.9 199 70.4
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 9.6e-75 283.9 186 72.6
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.3e-74 283.5 197 68.0
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.3e-74 283.5 197 68.0
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.3e-74 283.5 198 67.7
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 1.3e-74 283.5 196 66.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 67.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.8e-74 282.3 183 69.9
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 6.2e-74 281.2 198 68.7
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 6.2e-74 281.2 198 69.2
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 6.2e-74 281.2 186 73.1
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 8.1e-74 280.8 197 67.5
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 8.1e-74 280.8 198 66.2
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.1e-73 280.4 187 72.7
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.4e-73 279.3 184 69.6
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.4e-73 279.3 198 66.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.1e-73 278.9 197 68.5
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.1e-73 278.9 198 68.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 6.9e-73 277.7 183 71.6
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 6.9e-73 277.7 199 67.3
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 67.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 9.0e-73 277.3 198 67.7
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.5e-72 276.6 184 69.0
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.5e-72 276.6 184 69.0
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.0e-72 276.2 196 70.4
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.4e-72 275.4 199 65.8
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 4.5e-72 275.0 198 69.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 5.8e-72 274.6 192 70.3
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.3e-71 273.5 198 65.7
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.3e-71 273.5 198 65.7
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.3e-71 273.5 198 65.7
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.2e-71 272.7 198 66.7
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.8e-71 271.9 196 67.9
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 4.9e-71 271.6 196 65.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.4e-70 270.0 197 65.5
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 1.4e-70 270.0 198 65.2
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 2.4e-70 269.2 198 65.7
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 3.2e-70 268.9 186 69.9
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.2e-70 268.5 198 64.1
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.6e-69 266.5 196 64.3
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 3.5e-69 265.4 191 68.1
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 6.7e-68 261.2 198 63.1
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 8.1e-66 254.2 183 66.7
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 2.4e-65 252.7 178 66.9
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.2e-64 250.4 198 62.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.0e-63 247.3 194 61.3
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 2.3e-60 236.1 196 59.7
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 2.3e-60 236.1 198 67.7
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.9e-59 233.0 170 67.1
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.5e-59 232.6 183 62.3
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 2.0e-56 223.0 144 71.5
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 5.9e-56 221.5 187 57.8
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.0e-55 220.7 143 72.7
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.7e-55 219.9 155 66.5
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.0e-55 218.4 169 63.3
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 8.4e-55 217.6 144 66.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 1.4e-54 216.9 156 62.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 3.2e-54 215.7 144 67.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 7.2e-54 214.5 197 54.8
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.8e-50 202.6 194 50.0
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 3.1e-49 199.1 198 50.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.9e-46 189.9 114 71.9
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 3.3e-43 179.1 198 48.5
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 7.4e-43 177.9 98 79.6
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 5.0e-39 165.2 126 67.5
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 7.4e-35 151.4 181 45.3
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.3e-34 150.6 182 43.4
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.8e-33 146.7 183 45.9
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 5.9e-24 115.2 68 77.9
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 7.7e-24 114.8 186 36.6
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.3e-23 114.0 73 67.1
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.9e-22 110.2 120 47.5
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.8e-20 103.6 192 39.1
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 4.0e-20 102.4 118 49.2
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.1e-17 92.4 70 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.6e-16 90.5 124 42.7
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.7e-15 87.0 63 61.9
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.0e-15 85.5 58 72.4
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 8.5e-15 84.7 123 41.5
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.7e-08 63.2 43 69.8
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 3.3e-06 56.2 35 74.3
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 5.6e-06 55.5 44 59.1


User provided reference genes

Program Settings