Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 2.0e-65 252.3 127 100.0
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 1.1e-50 203.4 117 88.9
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 5.2e-50 201.1 117 87.2
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 2.6e-49 198.7 117 86.3
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 7.6e-49 197.2 117 84.6
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 4.9e-48 194.5 117 82.1
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 4.3e-44 181.4 117 78.6
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 4.8e-43 177.9 117 76.9
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 6.2e-43 177.6 117 76.1
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.4e-42 176.4 117 76.1
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.8e-42 176.0 117 76.1
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.4e-42 175.6 112 79.5
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.4e-42 175.6 117 73.5
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 3.1e-42 175.3 117 73.5
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 3.1e-42 175.3 117 75.2
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.2e-41 173.3 117 72.6
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.2e-41 173.3 117 75.2
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.0e-41 172.6 117 73.5
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.0e-41 172.6 117 74.4
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.0e-41 172.6 117 71.8
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.6e-41 172.2 117 73.5
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 4.5e-41 171.4 117 73.5
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 5.8e-41 171.0 117 73.5
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 9.9e-41 170.2 117 72.6
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 1.3e-40 169.9 117 72.6
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.7e-40 169.5 117 71.8
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 4.9e-40 167.9 117 68.4
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 4.9e-40 167.9 117 70.1
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 6.4e-40 167.5 117 71.8
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 6.4e-40 167.5 117 70.9
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 8.4e-40 167.2 117 70.9
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.4e-39 166.4 117 66.7
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 1.9e-39 166.0 117 71.8
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.9e-39 166.0 117 70.1
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 3.2e-39 165.2 117 70.1
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.2e-39 165.2 117 69.2
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.2e-39 165.2 117 69.2
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 3.2e-39 165.2 117 69.2
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 4.2e-39 164.9 117 70.1
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 4.2e-39 164.9 117 70.1
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 4.2e-39 164.9 117 71.8
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 4.2e-39 164.9 117 66.7
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 4.2e-39 164.9 113 69.9
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 5.4e-39 164.5 117 70.1
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 7.1e-39 164.1 117 69.2
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 9.3e-39 163.7 117 70.1
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-38 163.3 117 68.4
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.6e-38 162.9 117 70.1
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.6e-38 162.9 117 70.1
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.6e-38 162.9 117 67.5
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.1e-38 162.5 117 69.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.7e-38 162.2 115 68.7
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 3.5e-38 161.8 129 67.4
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.5e-38 161.8 117 68.4
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 3.5e-38 161.8 117 68.4
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.5e-38 161.8 117 68.4
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 6.0e-38 161.0 117 66.7
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 6.0e-38 161.0 117 66.7
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 6.0e-38 161.0 113 68.1
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 6.0e-38 161.0 117 68.4
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 7.9e-38 160.6 126 64.3
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 7.9e-38 160.6 117 66.7
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 7.9e-38 160.6 117 66.7
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 7.9e-38 160.6 117 69.2
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.0e-37 160.2 113 69.0
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.0e-37 160.2 117 66.7
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.3e-37 159.8 117 65.8
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.8e-37 159.5 116 69.8
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.3e-37 159.1 117 66.7
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 3.0e-37 158.7 117 68.4
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 3.0e-37 158.7 117 68.4
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 5.1e-37 157.9 141 59.6
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 5.1e-37 157.9 117 67.5
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 5.1e-37 157.9 117 66.7
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 8.7e-37 157.1 117 64.1
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.1e-36 156.8 117 68.4
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.5e-36 156.4 117 65.8
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 1.5e-36 156.4 117 68.4
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.9e-36 156.0 117 65.0
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 1.9e-36 156.0 117 66.7
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.3e-36 155.2 117 65.8
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 3.3e-36 155.2 117 67.5
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 5.6e-36 154.5 117 66.7
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 5.6e-36 154.5 117 65.8
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 5.6e-36 154.5 117 63.2
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 7.4e-36 154.1 117 65.0
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 1.3e-35 153.3 117 63.2
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.8e-35 152.1 114 63.2
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 3.7e-35 151.8 117 64.1
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 3.7e-35 151.8 112 64.3
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 6.2e-35 151.0 146 56.2
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 8.1e-35 150.6 138 58.0
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.1e-35 150.6 117 61.5
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.1e-34 150.2 117 66.7
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 1.8e-34 149.4 144 56.2
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 2.4e-34 149.1 117 61.5
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.4e-34 149.1 117 62.4
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 4.0e-34 148.3 117 62.4
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 5.3e-34 147.9 117 63.2
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 9.0e-34 147.1 117 63.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.5e-33 146.4 117 62.4
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.0e-33 146.0 117 63.2
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.6e-33 145.6 117 62.4
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 3.4e-33 145.2 117 61.5
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 5.8e-33 144.4 117 62.4
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 4.9e-32 141.4 117 62.4
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 4.2e-31 138.3 117 59.0
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.1e-31 137.5 117 59.0
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.1e-31 137.5 117 59.0
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 2.3e-29 132.5 97 69.1
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 6.7e-29 131.0 82 75.6
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 3.3e-28 128.6 117 50.4
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.8e-27 125.6 92 68.5
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 6.2e-27 124.4 86 70.9
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.4e-26 123.2 82 72.0
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 5.3e-26 121.3 117 47.9
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 9.0e-26 120.6 117 52.1
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 9.0e-26 120.6 80 70.0
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.2e-25 120.2 72 79.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.2e-25 120.2 112 50.0
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 1.2e-25 120.2 80 70.0
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 3.4e-25 118.6 82 69.5
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.0e-24 117.1 91 67.0
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.9e-24 115.5 80 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.1e-23 113.6 117 47.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 5.5e-23 111.3 117 49.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 7.1e-23 110.9 65 83.1
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.9e-20 102.8 85 60.0
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 3.3e-20 102.1 95 58.9
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 5.5e-15 84.7 46 89.1
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 5.5e-15 84.7 109 43.1
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.9e-13 78.6 50 78.0
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.8e-10 69.7 48 75.0
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 3.1e-10 68.9 114 30.7
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 5.3e-10 68.2 90 48.9
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 2.0e-09 66.2 51 62.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 8.5e-08 60.8 77 46.8


User provided reference genes

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